Image generator missing positional argument for unet keras












2















I keep getting the following error for below code when I try to train the model: TypeError: fit_generator() missing 1 required positional argument: 'generator'. For the life of me I can not figure out what is causing this error. x_train is an rgb image of shape (400, 256, 256, 3) and for y_train i have 10 output classes making it shape (400, 256, 256, 10). What is going wrong here?



If necessary the data can be downloaded with the following link:
https://www49.zippyshare.com/v/5pR3GPv3/file.html



import skimage
from skimage.io import imread, imshow, imread_collection, concatenate_images
from skimage.transform import resize
from skimage.morphology import label
import numpy as np
import matplotlib.pyplot as plt
from keras.models import Model
from keras.layers import Input, merge, Convolution2D, MaxPooling2D, UpSampling2D, Reshape, core, Dropout
from keras.optimizers import Adam
from keras.callbacks import ModelCheckpoint, LearningRateScheduler
from keras import backend as K
from sklearn.metrics import jaccard_similarity_score
from shapely.geometry import MultiPolygon, Polygon
import shapely.wkt
import shapely.affinity
from collections import defaultdict
from keras.preprocessing.image import ImageDataGenerator
from keras.utils.np_utils import to_categorical
from keras import utils as np_utils
import os
from keras.preprocessing.image import ImageDataGenerator
gen = ImageDataGenerator()
#Importing image and labels
labels = skimage.io.imread("ede_subset_293_wegen.tif")
images = skimage.io.imread("ede_subset_293_20180502_planetscope.tif")[...,:-1]


#scaling image
img_scaled = images / images.max()

#Make non-roads 0
labels[labels == 15] = 0

#Resizing image and mask and labels
img_scaled_resized = img_scaled[:6400, :6400 ]
print(img_scaled_resized.shape)
labels_resized = labels[:6400, :6400]
print(labels_resized.shape)

#splitting images
split_img = [
np.split(array, 25, axis=0)
for array in np.split(img_scaled_resized, 25, axis=1)
]

split_img[-1][-1].shape

#splitting labels
split_labels = [
np.split(array, 25, axis=0)
for array in np.split(labels_resized, 25, axis=1)
]

#Convert to np.array
split_labels = np.array(split_labels)
split_img = np.array(split_img)

train_images = np.reshape(split_img, (625, 256, 256, 3))
train_labels = np.reshape(split_labels, (625, 256, 256, 10))

train_labels = np_utils.to_categorical(train_labels, 10)

#Create train test and val
x_train = train_images[:400,:,:,:]
x_val = train_images[400:500,:,:,:]
x_test = train_images[500:625,:,:,:]
y_train = train_labels[:400,:,:]
y_val = train_labels[400:500,:,:]
y_test = train_labels[500:625,:,:]

# Create image generator (credit to Ioannis Nasios)
data_gen_args = dict(rotation_range=5,
width_shift_range=0.1,
height_shift_range=0.1,
validation_split=0.2)
image_datagen = ImageDataGenerator(**data_gen_args)

seed = 1
batch_size = 100

def XYaugmentGenerator(X1, y, seed, batch_size):
genX1 = gen.flow(X1, y, batch_size=batch_size, seed=seed)
genX2 = gen.flow(y, X1, batch_size=batch_size, seed=seed)
while True:
X1i = genX1.next()
X2i = genX2.next()

yield X1i[0], X2i[0]


# Train model
Model.fit_generator(XYaugmentGenerator(x_train, y_train, seed, batch_size), steps_per_epoch=np.ceil(float(len(x_train)) / float(batch_size)),
validation_data = XYaugmentGenerator(x_val, y_val,seed, batch_size),
validation_steps = np.ceil(float(len(x_val)) / float(batch_size))
, shuffle=True, epochs=20)









share|improve this question





























    2















    I keep getting the following error for below code when I try to train the model: TypeError: fit_generator() missing 1 required positional argument: 'generator'. For the life of me I can not figure out what is causing this error. x_train is an rgb image of shape (400, 256, 256, 3) and for y_train i have 10 output classes making it shape (400, 256, 256, 10). What is going wrong here?



    If necessary the data can be downloaded with the following link:
    https://www49.zippyshare.com/v/5pR3GPv3/file.html



    import skimage
    from skimage.io import imread, imshow, imread_collection, concatenate_images
    from skimage.transform import resize
    from skimage.morphology import label
    import numpy as np
    import matplotlib.pyplot as plt
    from keras.models import Model
    from keras.layers import Input, merge, Convolution2D, MaxPooling2D, UpSampling2D, Reshape, core, Dropout
    from keras.optimizers import Adam
    from keras.callbacks import ModelCheckpoint, LearningRateScheduler
    from keras import backend as K
    from sklearn.metrics import jaccard_similarity_score
    from shapely.geometry import MultiPolygon, Polygon
    import shapely.wkt
    import shapely.affinity
    from collections import defaultdict
    from keras.preprocessing.image import ImageDataGenerator
    from keras.utils.np_utils import to_categorical
    from keras import utils as np_utils
    import os
    from keras.preprocessing.image import ImageDataGenerator
    gen = ImageDataGenerator()
    #Importing image and labels
    labels = skimage.io.imread("ede_subset_293_wegen.tif")
    images = skimage.io.imread("ede_subset_293_20180502_planetscope.tif")[...,:-1]


    #scaling image
    img_scaled = images / images.max()

    #Make non-roads 0
    labels[labels == 15] = 0

    #Resizing image and mask and labels
    img_scaled_resized = img_scaled[:6400, :6400 ]
    print(img_scaled_resized.shape)
    labels_resized = labels[:6400, :6400]
    print(labels_resized.shape)

    #splitting images
    split_img = [
    np.split(array, 25, axis=0)
    for array in np.split(img_scaled_resized, 25, axis=1)
    ]

    split_img[-1][-1].shape

    #splitting labels
    split_labels = [
    np.split(array, 25, axis=0)
    for array in np.split(labels_resized, 25, axis=1)
    ]

    #Convert to np.array
    split_labels = np.array(split_labels)
    split_img = np.array(split_img)

    train_images = np.reshape(split_img, (625, 256, 256, 3))
    train_labels = np.reshape(split_labels, (625, 256, 256, 10))

    train_labels = np_utils.to_categorical(train_labels, 10)

    #Create train test and val
    x_train = train_images[:400,:,:,:]
    x_val = train_images[400:500,:,:,:]
    x_test = train_images[500:625,:,:,:]
    y_train = train_labels[:400,:,:]
    y_val = train_labels[400:500,:,:]
    y_test = train_labels[500:625,:,:]

    # Create image generator (credit to Ioannis Nasios)
    data_gen_args = dict(rotation_range=5,
    width_shift_range=0.1,
    height_shift_range=0.1,
    validation_split=0.2)
    image_datagen = ImageDataGenerator(**data_gen_args)

    seed = 1
    batch_size = 100

    def XYaugmentGenerator(X1, y, seed, batch_size):
    genX1 = gen.flow(X1, y, batch_size=batch_size, seed=seed)
    genX2 = gen.flow(y, X1, batch_size=batch_size, seed=seed)
    while True:
    X1i = genX1.next()
    X2i = genX2.next()

    yield X1i[0], X2i[0]


    # Train model
    Model.fit_generator(XYaugmentGenerator(x_train, y_train, seed, batch_size), steps_per_epoch=np.ceil(float(len(x_train)) / float(batch_size)),
    validation_data = XYaugmentGenerator(x_val, y_val,seed, batch_size),
    validation_steps = np.ceil(float(len(x_val)) / float(batch_size))
    , shuffle=True, epochs=20)









    share|improve this question



























      2












      2








      2








      I keep getting the following error for below code when I try to train the model: TypeError: fit_generator() missing 1 required positional argument: 'generator'. For the life of me I can not figure out what is causing this error. x_train is an rgb image of shape (400, 256, 256, 3) and for y_train i have 10 output classes making it shape (400, 256, 256, 10). What is going wrong here?



      If necessary the data can be downloaded with the following link:
      https://www49.zippyshare.com/v/5pR3GPv3/file.html



      import skimage
      from skimage.io import imread, imshow, imread_collection, concatenate_images
      from skimage.transform import resize
      from skimage.morphology import label
      import numpy as np
      import matplotlib.pyplot as plt
      from keras.models import Model
      from keras.layers import Input, merge, Convolution2D, MaxPooling2D, UpSampling2D, Reshape, core, Dropout
      from keras.optimizers import Adam
      from keras.callbacks import ModelCheckpoint, LearningRateScheduler
      from keras import backend as K
      from sklearn.metrics import jaccard_similarity_score
      from shapely.geometry import MultiPolygon, Polygon
      import shapely.wkt
      import shapely.affinity
      from collections import defaultdict
      from keras.preprocessing.image import ImageDataGenerator
      from keras.utils.np_utils import to_categorical
      from keras import utils as np_utils
      import os
      from keras.preprocessing.image import ImageDataGenerator
      gen = ImageDataGenerator()
      #Importing image and labels
      labels = skimage.io.imread("ede_subset_293_wegen.tif")
      images = skimage.io.imread("ede_subset_293_20180502_planetscope.tif")[...,:-1]


      #scaling image
      img_scaled = images / images.max()

      #Make non-roads 0
      labels[labels == 15] = 0

      #Resizing image and mask and labels
      img_scaled_resized = img_scaled[:6400, :6400 ]
      print(img_scaled_resized.shape)
      labels_resized = labels[:6400, :6400]
      print(labels_resized.shape)

      #splitting images
      split_img = [
      np.split(array, 25, axis=0)
      for array in np.split(img_scaled_resized, 25, axis=1)
      ]

      split_img[-1][-1].shape

      #splitting labels
      split_labels = [
      np.split(array, 25, axis=0)
      for array in np.split(labels_resized, 25, axis=1)
      ]

      #Convert to np.array
      split_labels = np.array(split_labels)
      split_img = np.array(split_img)

      train_images = np.reshape(split_img, (625, 256, 256, 3))
      train_labels = np.reshape(split_labels, (625, 256, 256, 10))

      train_labels = np_utils.to_categorical(train_labels, 10)

      #Create train test and val
      x_train = train_images[:400,:,:,:]
      x_val = train_images[400:500,:,:,:]
      x_test = train_images[500:625,:,:,:]
      y_train = train_labels[:400,:,:]
      y_val = train_labels[400:500,:,:]
      y_test = train_labels[500:625,:,:]

      # Create image generator (credit to Ioannis Nasios)
      data_gen_args = dict(rotation_range=5,
      width_shift_range=0.1,
      height_shift_range=0.1,
      validation_split=0.2)
      image_datagen = ImageDataGenerator(**data_gen_args)

      seed = 1
      batch_size = 100

      def XYaugmentGenerator(X1, y, seed, batch_size):
      genX1 = gen.flow(X1, y, batch_size=batch_size, seed=seed)
      genX2 = gen.flow(y, X1, batch_size=batch_size, seed=seed)
      while True:
      X1i = genX1.next()
      X2i = genX2.next()

      yield X1i[0], X2i[0]


      # Train model
      Model.fit_generator(XYaugmentGenerator(x_train, y_train, seed, batch_size), steps_per_epoch=np.ceil(float(len(x_train)) / float(batch_size)),
      validation_data = XYaugmentGenerator(x_val, y_val,seed, batch_size),
      validation_steps = np.ceil(float(len(x_val)) / float(batch_size))
      , shuffle=True, epochs=20)









      share|improve this question
















      I keep getting the following error for below code when I try to train the model: TypeError: fit_generator() missing 1 required positional argument: 'generator'. For the life of me I can not figure out what is causing this error. x_train is an rgb image of shape (400, 256, 256, 3) and for y_train i have 10 output classes making it shape (400, 256, 256, 10). What is going wrong here?



      If necessary the data can be downloaded with the following link:
      https://www49.zippyshare.com/v/5pR3GPv3/file.html



      import skimage
      from skimage.io import imread, imshow, imread_collection, concatenate_images
      from skimage.transform import resize
      from skimage.morphology import label
      import numpy as np
      import matplotlib.pyplot as plt
      from keras.models import Model
      from keras.layers import Input, merge, Convolution2D, MaxPooling2D, UpSampling2D, Reshape, core, Dropout
      from keras.optimizers import Adam
      from keras.callbacks import ModelCheckpoint, LearningRateScheduler
      from keras import backend as K
      from sklearn.metrics import jaccard_similarity_score
      from shapely.geometry import MultiPolygon, Polygon
      import shapely.wkt
      import shapely.affinity
      from collections import defaultdict
      from keras.preprocessing.image import ImageDataGenerator
      from keras.utils.np_utils import to_categorical
      from keras import utils as np_utils
      import os
      from keras.preprocessing.image import ImageDataGenerator
      gen = ImageDataGenerator()
      #Importing image and labels
      labels = skimage.io.imread("ede_subset_293_wegen.tif")
      images = skimage.io.imread("ede_subset_293_20180502_planetscope.tif")[...,:-1]


      #scaling image
      img_scaled = images / images.max()

      #Make non-roads 0
      labels[labels == 15] = 0

      #Resizing image and mask and labels
      img_scaled_resized = img_scaled[:6400, :6400 ]
      print(img_scaled_resized.shape)
      labels_resized = labels[:6400, :6400]
      print(labels_resized.shape)

      #splitting images
      split_img = [
      np.split(array, 25, axis=0)
      for array in np.split(img_scaled_resized, 25, axis=1)
      ]

      split_img[-1][-1].shape

      #splitting labels
      split_labels = [
      np.split(array, 25, axis=0)
      for array in np.split(labels_resized, 25, axis=1)
      ]

      #Convert to np.array
      split_labels = np.array(split_labels)
      split_img = np.array(split_img)

      train_images = np.reshape(split_img, (625, 256, 256, 3))
      train_labels = np.reshape(split_labels, (625, 256, 256, 10))

      train_labels = np_utils.to_categorical(train_labels, 10)

      #Create train test and val
      x_train = train_images[:400,:,:,:]
      x_val = train_images[400:500,:,:,:]
      x_test = train_images[500:625,:,:,:]
      y_train = train_labels[:400,:,:]
      y_val = train_labels[400:500,:,:]
      y_test = train_labels[500:625,:,:]

      # Create image generator (credit to Ioannis Nasios)
      data_gen_args = dict(rotation_range=5,
      width_shift_range=0.1,
      height_shift_range=0.1,
      validation_split=0.2)
      image_datagen = ImageDataGenerator(**data_gen_args)

      seed = 1
      batch_size = 100

      def XYaugmentGenerator(X1, y, seed, batch_size):
      genX1 = gen.flow(X1, y, batch_size=batch_size, seed=seed)
      genX2 = gen.flow(y, X1, batch_size=batch_size, seed=seed)
      while True:
      X1i = genX1.next()
      X2i = genX2.next()

      yield X1i[0], X2i[0]


      # Train model
      Model.fit_generator(XYaugmentGenerator(x_train, y_train, seed, batch_size), steps_per_epoch=np.ceil(float(len(x_train)) / float(batch_size)),
      validation_data = XYaugmentGenerator(x_val, y_val,seed, batch_size),
      validation_steps = np.ceil(float(len(x_val)) / float(batch_size))
      , shuffle=True, epochs=20)






      python machine-learning keras generator conv-neural-network






      share|improve this question















      share|improve this question













      share|improve this question




      share|improve this question








      edited Nov 21 '18 at 12:00









      Ioannis Nasios

      3,79431035




      3,79431035










      asked Nov 21 '18 at 10:36









      Eeuwigestudent1Eeuwigestudent1

      467




      467
























          1 Answer
          1






          active

          oldest

          votes


















          1














          You have a few mistakes in your code, but considering your error:




          TypeError: fit_generator() missing 1 required positional argument:
          'generator'




          this is caused because fit_generator call XYaugmentGenerator but no augmentation generator is called inside.



          gen.flow(...


          won't work because gen is not declared. You should either rename image_datagen to gen as:



          gen = ImageDataGenerator(**data_gen_args)


          or, replace gen with image_datagen



          genX1 = image_datagen.flow(X1, y, batch_size=batch_size, seed=seed)
          genX2 = image_datagen.flow(y, X1, batch_size=batch_size, seed=seed)





          share|improve this answer

























            Your Answer






            StackExchange.ifUsing("editor", function () {
            StackExchange.using("externalEditor", function () {
            StackExchange.using("snippets", function () {
            StackExchange.snippets.init();
            });
            });
            }, "code-snippets");

            StackExchange.ready(function() {
            var channelOptions = {
            tags: "".split(" "),
            id: "1"
            };
            initTagRenderer("".split(" "), "".split(" "), channelOptions);

            StackExchange.using("externalEditor", function() {
            // Have to fire editor after snippets, if snippets enabled
            if (StackExchange.settings.snippets.snippetsEnabled) {
            StackExchange.using("snippets", function() {
            createEditor();
            });
            }
            else {
            createEditor();
            }
            });

            function createEditor() {
            StackExchange.prepareEditor({
            heartbeatType: 'answer',
            autoActivateHeartbeat: false,
            convertImagesToLinks: true,
            noModals: true,
            showLowRepImageUploadWarning: true,
            reputationToPostImages: 10,
            bindNavPrevention: true,
            postfix: "",
            imageUploader: {
            brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
            contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
            allowUrls: true
            },
            onDemand: true,
            discardSelector: ".discard-answer"
            ,immediatelyShowMarkdownHelp:true
            });


            }
            });














            draft saved

            draft discarded


















            StackExchange.ready(
            function () {
            StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53410205%2fimage-generator-missing-positional-argument-for-unet-keras%23new-answer', 'question_page');
            }
            );

            Post as a guest















            Required, but never shown

























            1 Answer
            1






            active

            oldest

            votes








            1 Answer
            1






            active

            oldest

            votes









            active

            oldest

            votes






            active

            oldest

            votes









            1














            You have a few mistakes in your code, but considering your error:




            TypeError: fit_generator() missing 1 required positional argument:
            'generator'




            this is caused because fit_generator call XYaugmentGenerator but no augmentation generator is called inside.



            gen.flow(...


            won't work because gen is not declared. You should either rename image_datagen to gen as:



            gen = ImageDataGenerator(**data_gen_args)


            or, replace gen with image_datagen



            genX1 = image_datagen.flow(X1, y, batch_size=batch_size, seed=seed)
            genX2 = image_datagen.flow(y, X1, batch_size=batch_size, seed=seed)





            share|improve this answer






























              1














              You have a few mistakes in your code, but considering your error:




              TypeError: fit_generator() missing 1 required positional argument:
              'generator'




              this is caused because fit_generator call XYaugmentGenerator but no augmentation generator is called inside.



              gen.flow(...


              won't work because gen is not declared. You should either rename image_datagen to gen as:



              gen = ImageDataGenerator(**data_gen_args)


              or, replace gen with image_datagen



              genX1 = image_datagen.flow(X1, y, batch_size=batch_size, seed=seed)
              genX2 = image_datagen.flow(y, X1, batch_size=batch_size, seed=seed)





              share|improve this answer




























                1












                1








                1







                You have a few mistakes in your code, but considering your error:




                TypeError: fit_generator() missing 1 required positional argument:
                'generator'




                this is caused because fit_generator call XYaugmentGenerator but no augmentation generator is called inside.



                gen.flow(...


                won't work because gen is not declared. You should either rename image_datagen to gen as:



                gen = ImageDataGenerator(**data_gen_args)


                or, replace gen with image_datagen



                genX1 = image_datagen.flow(X1, y, batch_size=batch_size, seed=seed)
                genX2 = image_datagen.flow(y, X1, batch_size=batch_size, seed=seed)





                share|improve this answer















                You have a few mistakes in your code, but considering your error:




                TypeError: fit_generator() missing 1 required positional argument:
                'generator'




                this is caused because fit_generator call XYaugmentGenerator but no augmentation generator is called inside.



                gen.flow(...


                won't work because gen is not declared. You should either rename image_datagen to gen as:



                gen = ImageDataGenerator(**data_gen_args)


                or, replace gen with image_datagen



                genX1 = image_datagen.flow(X1, y, batch_size=batch_size, seed=seed)
                genX2 = image_datagen.flow(y, X1, batch_size=batch_size, seed=seed)






                share|improve this answer














                share|improve this answer



                share|improve this answer








                edited Nov 21 '18 at 11:06

























                answered Nov 21 '18 at 11:00









                Ioannis NasiosIoannis Nasios

                3,79431035




                3,79431035
































                    draft saved

                    draft discarded




















































                    Thanks for contributing an answer to Stack Overflow!


                    • Please be sure to answer the question. Provide details and share your research!

                    But avoid



                    • Asking for help, clarification, or responding to other answers.

                    • Making statements based on opinion; back them up with references or personal experience.


                    To learn more, see our tips on writing great answers.




                    draft saved


                    draft discarded














                    StackExchange.ready(
                    function () {
                    StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53410205%2fimage-generator-missing-positional-argument-for-unet-keras%23new-answer', 'question_page');
                    }
                    );

                    Post as a guest















                    Required, but never shown





















































                    Required, but never shown














                    Required, but never shown












                    Required, but never shown







                    Required, but never shown

































                    Required, but never shown














                    Required, but never shown












                    Required, but never shown







                    Required, but never shown







                    Popular posts from this blog

                    Guess what letter conforming each word

                    Port of Spain

                    Run scheduled task as local user group (not BUILTIN)