Resample or aggregate large raster limiting memory use R
I'm trying to resample a huge worldpop population raster but I keep crashing my linux instance of R which has 32GB memory. When I launch a 52gb memory google compute instance, the code below works, but it crashes my regular 32gb ram computer.
Is there a way to do either a raster aggregation or resampling LIMITING MEMORY USE?
Download code for a large worldpop raster that I am having issues resampling:
###download the huge raster to recreate scale problem
devtools::install_github("nbarsch/spaceheater")
library(spaceheater)
getWPdownload("Tanzania","Population","adj",2015) #warning: downloads near 1gb file
library(raster)
wpras <- raster("TANZANIA_Population_adj_2015.tif")
TWO METHODS that work on a computer with 52GB ram, but kill my local computer 32GB ram:
#aggregate method
agras <- raster::aggregate(wpras,fact=10,expand=T)
#returns "Killed"
#resamp method
reras <- raster(nrow = ceiling(nrow(wpras)/10), ncol = ceiling(ncol(wpras)/10))
reras2 <- raster::resample(wpras, reras, method="bilinear")
#returns Error: cannot allocate vector of size 1.3 Gb
Anyone have a solution that doesn't use all the ram? Thanks!
r memory raster ram
asked Nov 16 '18 at 8:46
Neal BarschNeal Barsch
615114
add a comment |
I'm trying to resample a huge worldpop population raster but I keep crashing my linux instance of R which has 32GB memory. When I launch a 52gb memory google compute instance, the code below works, but it crashes my regular 32gb ram computer.
Is there a way to do either a raster aggregation or resampling LIMITING MEMORY USE?
Download code for a large worldpop raster that I am having issues resampling:
###download the huge raster to recreate scale problem
devtools::install_github("nbarsch/spaceheater")
library(spaceheater)
getWPdownload("Tanzania","Population","adj",2015) #warning: downloads near 1gb file
library(raster)
wpras <- raster("TANZANIA_Population_adj_2015.tif")
TWO METHODS that work on a computer with 52GB ram, but kill my local computer 32GB ram:
#aggregate method
agras <- raster::aggregate(wpras,fact=10,expand=T)
#returns "Killed"
#resamp method
reras <- raster(nrow = ceiling(nrow(wpras)/10), ncol = ceiling(ncol(wpras)/10))
reras2 <- raster::resample(wpras, reras, method="bilinear")
#returns Error: cannot allocate vector of size 1.3 Gb
Anyone have a solution that doesn't use all the ram? Thanks!
r memory raster ram
asked Nov 16 '18 at 8:46
Neal BarschNeal Barsch
615114
# increase ram memory.limit()
– Dr. Flow
Nov 16 '18 at 10:42
add a comment |
I'm trying to resample a huge worldpop population raster but I keep crashing my linux instance of R which has 32GB memory. When I launch a 52gb memory google compute instance, the code below works, but it crashes my regular 32gb ram computer.
Is there a way to do either a raster aggregation or resampling LIMITING MEMORY USE?
Download code for a large worldpop raster that I am having issues resampling:
###download the huge raster to recreate scale problem
devtools::install_github("nbarsch/spaceheater")
library(spaceheater)
getWPdownload("Tanzania","Population","adj",2015) #warning: downloads near 1gb file
library(raster)
wpras <- raster("TANZANIA_Population_adj_2015.tif")
TWO METHODS that work on a computer with 52GB ram, but kill my local computer 32GB ram:
#aggregate method
agras <- raster::aggregate(wpras,fact=10,expand=T)
#returns "Killed"
#resamp method
reras <- raster(nrow = ceiling(nrow(wpras)/10), ncol = ceiling(ncol(wpras)/10))
reras2 <- raster::resample(wpras, reras, method="bilinear")
#returns Error: cannot allocate vector of size 1.3 Gb
Anyone have a solution that doesn't use all the ram? Thanks!
r memory raster ram
asked Nov 16 '18 at 8:46
Neal BarschNeal Barsch
615114
I'm trying to resample a huge worldpop population raster but I keep crashing my linux instance of R which has 32GB memory. When I launch a 52gb memory google compute instance, the code below works, but it crashes my regular 32gb ram computer.
Is there a way to do either a raster aggregation or resampling LIMITING MEMORY USE?
Download code for a large worldpop raster that I am having issues resampling:
###download the huge raster to recreate scale problem
devtools::install_github("nbarsch/spaceheater")
library(spaceheater)
getWPdownload("Tanzania","Population","adj",2015) #warning: downloads near 1gb file
library(raster)
wpras <- raster("TANZANIA_Population_adj_2015.tif")
TWO METHODS that work on a computer with 52GB ram, but kill my local computer 32GB ram:
#aggregate method
agras <- raster::aggregate(wpras,fact=10,expand=T)
#returns "Killed"
#resamp method
reras <- raster(nrow = ceiling(nrow(wpras)/10), ncol = ceiling(ncol(wpras)/10))
reras2 <- raster::resample(wpras, reras, method="bilinear")
#returns Error: cannot allocate vector of size 1.3 Gb
Anyone have a solution that doesn't use all the ram? Thanks!
r memory raster ram
r memory raster ram
asked Nov 16 '18 at 8:46
Neal BarschNeal Barsch
615114
asked Nov 16 '18 at 8:46
Neal BarschNeal Barsch
615114
asked Nov 16 '18 at 8:46
Neal BarschNeal Barsch
615114
asked Nov 16 '18 at 8:46
Neal BarschNeal Barsch
615114
asked Nov 16 '18 at 8:46
Neal BarschNeal Barsch
615114
615114
# increase ram memory.limit()
– Dr. Flow
Nov 16 '18 at 10:42
add a comment |
# increase ram memory.limit()
– Dr. Flow
Nov 16 '18 at 10:42
# increase ram memory.limit()
– Dr. Flow
Nov 16 '18 at 10:42
# increase ram memory.limit()
– Dr. Flow
Nov 16 '18 at 10:42
add a comment |
1 Answer
1
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oldest
votes
You probably should update the raster package. The previous short-lived release (2.7-15) had an error in the memory settings. Version 2.8-4 should have fixed that.
answered Nov 17 '18 at 4:19
Robert HijmansRobert Hijmans
13.1k12428
add a comment |
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1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
You probably should update the raster package. The previous short-lived release (2.7-15) had an error in the memory settings. Version 2.8-4 should have fixed that.
answered Nov 17 '18 at 4:19
Robert HijmansRobert Hijmans
13.1k12428
add a comment |
You probably should update the raster package. The previous short-lived release (2.7-15) had an error in the memory settings. Version 2.8-4 should have fixed that.
answered Nov 17 '18 at 4:19
Robert HijmansRobert Hijmans
13.1k12428
add a comment |
You probably should update the raster package. The previous short-lived release (2.7-15) had an error in the memory settings. Version 2.8-4 should have fixed that.
answered Nov 17 '18 at 4:19
Robert HijmansRobert Hijmans
13.1k12428
You probably should update the raster package. The previous short-lived release (2.7-15) had an error in the memory settings. Version 2.8-4 should have fixed that.
answered Nov 17 '18 at 4:19
Robert HijmansRobert Hijmans
13.1k12428
answered Nov 17 '18 at 4:19
Robert HijmansRobert Hijmans
13.1k12428
answered Nov 17 '18 at 4:19
Robert HijmansRobert Hijmans
13.1k12428
answered Nov 17 '18 at 4:19
Robert HijmansRobert Hijmans
13.1k12428
13.1k12428
add a comment |
add a comment |
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# increase ram memory.limit()
– Dr. Flow
Nov 16 '18 at 10:42