How to retrieve all the values from an XML file when I have two titles in one XML document in a dinamic way?
I need to use a dinamic way to get the value from My XML file.
HERE IS MY ORGINAL XML FILE
The code i use to get the value was provide by @jdweng and i works...but i need a dynamic way.. because the problem with this way is if i change the name of tags .. i will need also to go at code to change the name.... but not if i have save the path in a table ..i just go at that table and i change here.
That is also the solution
The code that i have for the moment :
Private Sub GetContinents()
Const FILENAME As String = "C:test.xml"
Dim settings As XmlReaderSettings = New XmlReaderSettings()
settings.ConformanceLevel = ConformanceLevel.Fragment
Dim reader As XmlReader = XmlReader.Create(FILENAME, settings)
Dim dt As DataTable = New DataTable()
dt.Columns.Add("Display Name", GetType(String))
dt.Columns.Add("Code", GetType(String))
dt.Columns.Add("Esame", GetType(String))
dt.Columns.Add("Esito", GetType(String))
dt.Columns.Add("Abnormal Flag", GetType(String))
dt.Columns.Add("Unita Di Misura", GetType(String))
dt.Columns.Add("Range Di Riferimento", GetType(String))
dt.Columns.Add("Metoda", GetType(String))
dt.Columns.Add("Low", GetType(Decimal))
dt.Columns.Add("High", GetType(Decimal))
dt.Columns.Add("Time", GetType(DateTime))
Dim uri = "urn:hl7-org:v3"
While (Not reader.EOF)
If reader.Name <> "section" Then
reader.ReadToFollowing("section", uri)
End If
If Not reader.EOF Then
Dim section As XElement = CType(XElement.ReadFrom(reader), XElement)
Dim xCode As XElement = section.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim displayName As String = CType(xCode.Attribute("displayName"), String)
For Each xComponent As XElement In section.Elements().Where(Function(x) x.Name.LocalName = "component")
Dim xEsame As XElement = xComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim code As String = CType(xEsame.Attribute("code"), String)
Dim xBody As XElement = xComponent.Descendants().Where(Function(x) x.Name.LocalName = "tbody").FirstOrDefault()
Dim data As New List(Of String)
data.AddRange({displayName, code})
data.AddRange(xBody.Descendants().Where(Function(x) x.Name.LocalName = "td").Select(Function(x) CType(x, String)))
Dim entry As XElement = section.Descendants().Where(Function(x) x.Name.LocalName = "entry").FirstOrDefault()
Dim low As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "low").FirstOrDefault()
If low Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(low.Attribute("value"), String)))
End If
Dim high As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "high").FirstOrDefault()
If high Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(high.Attribute("value"), String)))
End If
Dim effectiveTime As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "effectiveTime").FirstOrDefault()
Dim dateStr As String = CType(effectiveTime.Attribute("value"), String)
data.Add(DateTime.ParseExact(dateStr, "yyyyMMddHHmmss", System.Globalization.CultureInfo.InvariantCulture))
'For i = 0 To data.Count - 1
Insert_CDA_Data(data)
' i = i + 11
'Next
'dt.Rows.Add(data.ToArray())
'Debug.WriteLine(dt)
Next xComponent
End If
End While
End Sub
Private Function Insert_CDA_Data(ByVal data As List(Of String))
Dim esito As Boolean = True
Try
Using scope As New TransactionScope()
operations.INSERT_CDA(ucDataCapture(data))
scope.Complete()
End Using
Catch ex As Exception
esito = False
Dim log As New Log
log.writeLog("Cda", ex)
End Try
Return esito
End Function
Private Function ucDataCapture(ByVal data As List(Of String)) As CDA
Dim CDA_D As New CDA
Try
CDA_D.codeProperty = data(1)
CDA_D.nameProperty = data(0)
CDA_D.esameProperty = data(2)
CDA_D.esitoProperty = data(3)
CDA_D.abnormalFlagProperty = data(4)
CDA_D.unitaDiMisuraProperty = data(5)
CDA_D.rangeDiRiferimentoProperty = data(6)
CDA_D.metodaProperty = data(7)
If data(8) IsNot Nothing Then
CDA_D.lowProperty = data(8)
Else
CDA_D.lowProperty = ""
End If
If data(9) IsNot Nothing Then
CDA_D.highProperty = data(9)
Else
CDA_D.highProperty = ""
End If
CDA_D.effectiveTimeProperty = data(10)
Catch ex As Exception
Dim log As New Log
log.writeLog("Cda ", ex)
End Try
Return CDA_D
End Function
Thank you for your help .
So the table should look like that or tables, because the first title does not have a low or high value, so this value will be take only where there is one .
So i have try this way....
Imports System.IO
Imports System.Xml
Module CdaParser
Sub Main()
Try
Console.Write("Enter CDA path: ")
Dim FilePath = Console.ReadLine()
If Not File.Exists(FilePath)
throw New Exception("Error! File does not exist.")
End If
'Load CDA
Dim Document = New XmlDocument()
Document.Load(FilePath)
'Load CDA
'Fetch and load namespaces
Dim DocumentNamespaces = New XmlNamespaceManager(Document.NameTable)
DocumentNamespaces.AddNamespace("xsi", "http://www.w3.org/2001/XMLSchema-instance")
Dim XPathNavigator = Document.CreateNavigator()
Dim Namespaces = XPathNavigator.GetNamespacesInScope(XmlNamespaceScope.All)
If Namespaces IsNot Nothing
For Each [Namespace] In Namespaces
DocumentNamespaces.AddNamespace([Namespace].Key, [Namespace].Value)
Next
End If
'Fetch and load namespaces
'Rule definitions that must be take from db.
Dim Rules = New Dictionary(Of String, String) From {
{"First Name", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='recordTarget'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patientRole'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patient'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='name'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='given'][namespace-uri()='urn:hl7-org:v3']"},
{"Last Name", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='recordTarget'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patientRole'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patient'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='name'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='family'][namespace-uri()='urn:hl7-org:v3']"},
{"Test", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][4]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='entry'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='act'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='entryRelationship'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='observation'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='value'][namespace-uri()='urn:hl7-org:v3'][1]/@xsi:type"},
{"Code", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='code'][namespace-uri()='urn:hl7-org:v3'][1]/@code"},
{"Esame", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='text'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='table'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='thead'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='tr'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='th'][namespace-uri()='urn:hl7-org:v3']"}}
'Rule definitions
'
For Each Rule In Rules
Dim Node = Document.SelectSingleNode(Rule.Value, DocumentNamespaces)
Dim Value = ""
If Node IsNot Nothing Then
Value = Node.InnerText
End If
Console.WriteLine(Rule.Key + ": " + Value)
Next
'For Each rule In Rules
' Dim node = Document.SelectNodes(rule.Value, DocumentNamespaces)
' Dim value = ""
' If node IsNot Nothing Then
' value = node.innertext
' End If
'Next
Console.ReadLine()
Catch Exception As Exception
Console.WriteLine(Exception.Message)
Console.ReadLine()
End Try
End Sub
End Module
But also i have one like this
second Xml
THE problem here it his that the table has more than rows the usually so for them i want to put one database like they were only separed for each row i wanna get -name-code-td value-low-hight-datetime.:
The result i got is :
xml vb.net oracle
add a comment |
I need to use a dinamic way to get the value from My XML file.
HERE IS MY ORGINAL XML FILE
The code i use to get the value was provide by @jdweng and i works...but i need a dynamic way.. because the problem with this way is if i change the name of tags .. i will need also to go at code to change the name.... but not if i have save the path in a table ..i just go at that table and i change here.
That is also the solution
The code that i have for the moment :
Private Sub GetContinents()
Const FILENAME As String = "C:test.xml"
Dim settings As XmlReaderSettings = New XmlReaderSettings()
settings.ConformanceLevel = ConformanceLevel.Fragment
Dim reader As XmlReader = XmlReader.Create(FILENAME, settings)
Dim dt As DataTable = New DataTable()
dt.Columns.Add("Display Name", GetType(String))
dt.Columns.Add("Code", GetType(String))
dt.Columns.Add("Esame", GetType(String))
dt.Columns.Add("Esito", GetType(String))
dt.Columns.Add("Abnormal Flag", GetType(String))
dt.Columns.Add("Unita Di Misura", GetType(String))
dt.Columns.Add("Range Di Riferimento", GetType(String))
dt.Columns.Add("Metoda", GetType(String))
dt.Columns.Add("Low", GetType(Decimal))
dt.Columns.Add("High", GetType(Decimal))
dt.Columns.Add("Time", GetType(DateTime))
Dim uri = "urn:hl7-org:v3"
While (Not reader.EOF)
If reader.Name <> "section" Then
reader.ReadToFollowing("section", uri)
End If
If Not reader.EOF Then
Dim section As XElement = CType(XElement.ReadFrom(reader), XElement)
Dim xCode As XElement = section.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim displayName As String = CType(xCode.Attribute("displayName"), String)
For Each xComponent As XElement In section.Elements().Where(Function(x) x.Name.LocalName = "component")
Dim xEsame As XElement = xComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim code As String = CType(xEsame.Attribute("code"), String)
Dim xBody As XElement = xComponent.Descendants().Where(Function(x) x.Name.LocalName = "tbody").FirstOrDefault()
Dim data As New List(Of String)
data.AddRange({displayName, code})
data.AddRange(xBody.Descendants().Where(Function(x) x.Name.LocalName = "td").Select(Function(x) CType(x, String)))
Dim entry As XElement = section.Descendants().Where(Function(x) x.Name.LocalName = "entry").FirstOrDefault()
Dim low As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "low").FirstOrDefault()
If low Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(low.Attribute("value"), String)))
End If
Dim high As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "high").FirstOrDefault()
If high Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(high.Attribute("value"), String)))
End If
Dim effectiveTime As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "effectiveTime").FirstOrDefault()
Dim dateStr As String = CType(effectiveTime.Attribute("value"), String)
data.Add(DateTime.ParseExact(dateStr, "yyyyMMddHHmmss", System.Globalization.CultureInfo.InvariantCulture))
'For i = 0 To data.Count - 1
Insert_CDA_Data(data)
' i = i + 11
'Next
'dt.Rows.Add(data.ToArray())
'Debug.WriteLine(dt)
Next xComponent
End If
End While
End Sub
Private Function Insert_CDA_Data(ByVal data As List(Of String))
Dim esito As Boolean = True
Try
Using scope As New TransactionScope()
operations.INSERT_CDA(ucDataCapture(data))
scope.Complete()
End Using
Catch ex As Exception
esito = False
Dim log As New Log
log.writeLog("Cda", ex)
End Try
Return esito
End Function
Private Function ucDataCapture(ByVal data As List(Of String)) As CDA
Dim CDA_D As New CDA
Try
CDA_D.codeProperty = data(1)
CDA_D.nameProperty = data(0)
CDA_D.esameProperty = data(2)
CDA_D.esitoProperty = data(3)
CDA_D.abnormalFlagProperty = data(4)
CDA_D.unitaDiMisuraProperty = data(5)
CDA_D.rangeDiRiferimentoProperty = data(6)
CDA_D.metodaProperty = data(7)
If data(8) IsNot Nothing Then
CDA_D.lowProperty = data(8)
Else
CDA_D.lowProperty = ""
End If
If data(9) IsNot Nothing Then
CDA_D.highProperty = data(9)
Else
CDA_D.highProperty = ""
End If
CDA_D.effectiveTimeProperty = data(10)
Catch ex As Exception
Dim log As New Log
log.writeLog("Cda ", ex)
End Try
Return CDA_D
End Function
Thank you for your help .
So the table should look like that or tables, because the first title does not have a low or high value, so this value will be take only where there is one .
So i have try this way....
Imports System.IO
Imports System.Xml
Module CdaParser
Sub Main()
Try
Console.Write("Enter CDA path: ")
Dim FilePath = Console.ReadLine()
If Not File.Exists(FilePath)
throw New Exception("Error! File does not exist.")
End If
'Load CDA
Dim Document = New XmlDocument()
Document.Load(FilePath)
'Load CDA
'Fetch and load namespaces
Dim DocumentNamespaces = New XmlNamespaceManager(Document.NameTable)
DocumentNamespaces.AddNamespace("xsi", "http://www.w3.org/2001/XMLSchema-instance")
Dim XPathNavigator = Document.CreateNavigator()
Dim Namespaces = XPathNavigator.GetNamespacesInScope(XmlNamespaceScope.All)
If Namespaces IsNot Nothing
For Each [Namespace] In Namespaces
DocumentNamespaces.AddNamespace([Namespace].Key, [Namespace].Value)
Next
End If
'Fetch and load namespaces
'Rule definitions that must be take from db.
Dim Rules = New Dictionary(Of String, String) From {
{"First Name", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='recordTarget'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patientRole'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patient'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='name'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='given'][namespace-uri()='urn:hl7-org:v3']"},
{"Last Name", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='recordTarget'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patientRole'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patient'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='name'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='family'][namespace-uri()='urn:hl7-org:v3']"},
{"Test", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][4]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='entry'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='act'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='entryRelationship'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='observation'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='value'][namespace-uri()='urn:hl7-org:v3'][1]/@xsi:type"},
{"Code", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='code'][namespace-uri()='urn:hl7-org:v3'][1]/@code"},
{"Esame", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='text'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='table'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='thead'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='tr'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='th'][namespace-uri()='urn:hl7-org:v3']"}}
'Rule definitions
'
For Each Rule In Rules
Dim Node = Document.SelectSingleNode(Rule.Value, DocumentNamespaces)
Dim Value = ""
If Node IsNot Nothing Then
Value = Node.InnerText
End If
Console.WriteLine(Rule.Key + ": " + Value)
Next
'For Each rule In Rules
' Dim node = Document.SelectNodes(rule.Value, DocumentNamespaces)
' Dim value = ""
' If node IsNot Nothing Then
' value = node.innertext
' End If
'Next
Console.ReadLine()
Catch Exception As Exception
Console.WriteLine(Exception.Message)
Console.ReadLine()
End Try
End Sub
End Module
But also i have one like this
second Xml
THE problem here it his that the table has more than rows the usually so for them i want to put one database like they were only separed for each row i wanna get -name-code-td value-low-hight-datetime.:
The result i got is :
xml vb.net oracle
Dim sections As List(Of XElement) = xe.Descendants("section").ToList()
– jdweng
Nov 16 '18 at 10:06
You can use a for each to enumerate through the list. If you xml is not well formed then you have to use an XmlReader to parse the code. You do not have to edit the xml file. I can easily fix the code late today.
– jdweng
Nov 16 '18 at 14:46
add a comment |
I need to use a dinamic way to get the value from My XML file.
HERE IS MY ORGINAL XML FILE
The code i use to get the value was provide by @jdweng and i works...but i need a dynamic way.. because the problem with this way is if i change the name of tags .. i will need also to go at code to change the name.... but not if i have save the path in a table ..i just go at that table and i change here.
That is also the solution
The code that i have for the moment :
Private Sub GetContinents()
Const FILENAME As String = "C:test.xml"
Dim settings As XmlReaderSettings = New XmlReaderSettings()
settings.ConformanceLevel = ConformanceLevel.Fragment
Dim reader As XmlReader = XmlReader.Create(FILENAME, settings)
Dim dt As DataTable = New DataTable()
dt.Columns.Add("Display Name", GetType(String))
dt.Columns.Add("Code", GetType(String))
dt.Columns.Add("Esame", GetType(String))
dt.Columns.Add("Esito", GetType(String))
dt.Columns.Add("Abnormal Flag", GetType(String))
dt.Columns.Add("Unita Di Misura", GetType(String))
dt.Columns.Add("Range Di Riferimento", GetType(String))
dt.Columns.Add("Metoda", GetType(String))
dt.Columns.Add("Low", GetType(Decimal))
dt.Columns.Add("High", GetType(Decimal))
dt.Columns.Add("Time", GetType(DateTime))
Dim uri = "urn:hl7-org:v3"
While (Not reader.EOF)
If reader.Name <> "section" Then
reader.ReadToFollowing("section", uri)
End If
If Not reader.EOF Then
Dim section As XElement = CType(XElement.ReadFrom(reader), XElement)
Dim xCode As XElement = section.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim displayName As String = CType(xCode.Attribute("displayName"), String)
For Each xComponent As XElement In section.Elements().Where(Function(x) x.Name.LocalName = "component")
Dim xEsame As XElement = xComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim code As String = CType(xEsame.Attribute("code"), String)
Dim xBody As XElement = xComponent.Descendants().Where(Function(x) x.Name.LocalName = "tbody").FirstOrDefault()
Dim data As New List(Of String)
data.AddRange({displayName, code})
data.AddRange(xBody.Descendants().Where(Function(x) x.Name.LocalName = "td").Select(Function(x) CType(x, String)))
Dim entry As XElement = section.Descendants().Where(Function(x) x.Name.LocalName = "entry").FirstOrDefault()
Dim low As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "low").FirstOrDefault()
If low Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(low.Attribute("value"), String)))
End If
Dim high As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "high").FirstOrDefault()
If high Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(high.Attribute("value"), String)))
End If
Dim effectiveTime As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "effectiveTime").FirstOrDefault()
Dim dateStr As String = CType(effectiveTime.Attribute("value"), String)
data.Add(DateTime.ParseExact(dateStr, "yyyyMMddHHmmss", System.Globalization.CultureInfo.InvariantCulture))
'For i = 0 To data.Count - 1
Insert_CDA_Data(data)
' i = i + 11
'Next
'dt.Rows.Add(data.ToArray())
'Debug.WriteLine(dt)
Next xComponent
End If
End While
End Sub
Private Function Insert_CDA_Data(ByVal data As List(Of String))
Dim esito As Boolean = True
Try
Using scope As New TransactionScope()
operations.INSERT_CDA(ucDataCapture(data))
scope.Complete()
End Using
Catch ex As Exception
esito = False
Dim log As New Log
log.writeLog("Cda", ex)
End Try
Return esito
End Function
Private Function ucDataCapture(ByVal data As List(Of String)) As CDA
Dim CDA_D As New CDA
Try
CDA_D.codeProperty = data(1)
CDA_D.nameProperty = data(0)
CDA_D.esameProperty = data(2)
CDA_D.esitoProperty = data(3)
CDA_D.abnormalFlagProperty = data(4)
CDA_D.unitaDiMisuraProperty = data(5)
CDA_D.rangeDiRiferimentoProperty = data(6)
CDA_D.metodaProperty = data(7)
If data(8) IsNot Nothing Then
CDA_D.lowProperty = data(8)
Else
CDA_D.lowProperty = ""
End If
If data(9) IsNot Nothing Then
CDA_D.highProperty = data(9)
Else
CDA_D.highProperty = ""
End If
CDA_D.effectiveTimeProperty = data(10)
Catch ex As Exception
Dim log As New Log
log.writeLog("Cda ", ex)
End Try
Return CDA_D
End Function
Thank you for your help .
So the table should look like that or tables, because the first title does not have a low or high value, so this value will be take only where there is one .
So i have try this way....
Imports System.IO
Imports System.Xml
Module CdaParser
Sub Main()
Try
Console.Write("Enter CDA path: ")
Dim FilePath = Console.ReadLine()
If Not File.Exists(FilePath)
throw New Exception("Error! File does not exist.")
End If
'Load CDA
Dim Document = New XmlDocument()
Document.Load(FilePath)
'Load CDA
'Fetch and load namespaces
Dim DocumentNamespaces = New XmlNamespaceManager(Document.NameTable)
DocumentNamespaces.AddNamespace("xsi", "http://www.w3.org/2001/XMLSchema-instance")
Dim XPathNavigator = Document.CreateNavigator()
Dim Namespaces = XPathNavigator.GetNamespacesInScope(XmlNamespaceScope.All)
If Namespaces IsNot Nothing
For Each [Namespace] In Namespaces
DocumentNamespaces.AddNamespace([Namespace].Key, [Namespace].Value)
Next
End If
'Fetch and load namespaces
'Rule definitions that must be take from db.
Dim Rules = New Dictionary(Of String, String) From {
{"First Name", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='recordTarget'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patientRole'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patient'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='name'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='given'][namespace-uri()='urn:hl7-org:v3']"},
{"Last Name", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='recordTarget'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patientRole'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patient'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='name'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='family'][namespace-uri()='urn:hl7-org:v3']"},
{"Test", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][4]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='entry'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='act'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='entryRelationship'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='observation'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='value'][namespace-uri()='urn:hl7-org:v3'][1]/@xsi:type"},
{"Code", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='code'][namespace-uri()='urn:hl7-org:v3'][1]/@code"},
{"Esame", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='text'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='table'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='thead'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='tr'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='th'][namespace-uri()='urn:hl7-org:v3']"}}
'Rule definitions
'
For Each Rule In Rules
Dim Node = Document.SelectSingleNode(Rule.Value, DocumentNamespaces)
Dim Value = ""
If Node IsNot Nothing Then
Value = Node.InnerText
End If
Console.WriteLine(Rule.Key + ": " + Value)
Next
'For Each rule In Rules
' Dim node = Document.SelectNodes(rule.Value, DocumentNamespaces)
' Dim value = ""
' If node IsNot Nothing Then
' value = node.innertext
' End If
'Next
Console.ReadLine()
Catch Exception As Exception
Console.WriteLine(Exception.Message)
Console.ReadLine()
End Try
End Sub
End Module
But also i have one like this
second Xml
THE problem here it his that the table has more than rows the usually so for them i want to put one database like they were only separed for each row i wanna get -name-code-td value-low-hight-datetime.:
The result i got is :
xml vb.net oracle
I need to use a dinamic way to get the value from My XML file.
HERE IS MY ORGINAL XML FILE
The code i use to get the value was provide by @jdweng and i works...but i need a dynamic way.. because the problem with this way is if i change the name of tags .. i will need also to go at code to change the name.... but not if i have save the path in a table ..i just go at that table and i change here.
That is also the solution
The code that i have for the moment :
Private Sub GetContinents()
Const FILENAME As String = "C:test.xml"
Dim settings As XmlReaderSettings = New XmlReaderSettings()
settings.ConformanceLevel = ConformanceLevel.Fragment
Dim reader As XmlReader = XmlReader.Create(FILENAME, settings)
Dim dt As DataTable = New DataTable()
dt.Columns.Add("Display Name", GetType(String))
dt.Columns.Add("Code", GetType(String))
dt.Columns.Add("Esame", GetType(String))
dt.Columns.Add("Esito", GetType(String))
dt.Columns.Add("Abnormal Flag", GetType(String))
dt.Columns.Add("Unita Di Misura", GetType(String))
dt.Columns.Add("Range Di Riferimento", GetType(String))
dt.Columns.Add("Metoda", GetType(String))
dt.Columns.Add("Low", GetType(Decimal))
dt.Columns.Add("High", GetType(Decimal))
dt.Columns.Add("Time", GetType(DateTime))
Dim uri = "urn:hl7-org:v3"
While (Not reader.EOF)
If reader.Name <> "section" Then
reader.ReadToFollowing("section", uri)
End If
If Not reader.EOF Then
Dim section As XElement = CType(XElement.ReadFrom(reader), XElement)
Dim xCode As XElement = section.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim displayName As String = CType(xCode.Attribute("displayName"), String)
For Each xComponent As XElement In section.Elements().Where(Function(x) x.Name.LocalName = "component")
Dim xEsame As XElement = xComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim code As String = CType(xEsame.Attribute("code"), String)
Dim xBody As XElement = xComponent.Descendants().Where(Function(x) x.Name.LocalName = "tbody").FirstOrDefault()
Dim data As New List(Of String)
data.AddRange({displayName, code})
data.AddRange(xBody.Descendants().Where(Function(x) x.Name.LocalName = "td").Select(Function(x) CType(x, String)))
Dim entry As XElement = section.Descendants().Where(Function(x) x.Name.LocalName = "entry").FirstOrDefault()
Dim low As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "low").FirstOrDefault()
If low Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(low.Attribute("value"), String)))
End If
Dim high As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "high").FirstOrDefault()
If high Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(high.Attribute("value"), String)))
End If
Dim effectiveTime As XElement = entry.Descendants().Where(Function(x) x.Name.LocalName = "effectiveTime").FirstOrDefault()
Dim dateStr As String = CType(effectiveTime.Attribute("value"), String)
data.Add(DateTime.ParseExact(dateStr, "yyyyMMddHHmmss", System.Globalization.CultureInfo.InvariantCulture))
'For i = 0 To data.Count - 1
Insert_CDA_Data(data)
' i = i + 11
'Next
'dt.Rows.Add(data.ToArray())
'Debug.WriteLine(dt)
Next xComponent
End If
End While
End Sub
Private Function Insert_CDA_Data(ByVal data As List(Of String))
Dim esito As Boolean = True
Try
Using scope As New TransactionScope()
operations.INSERT_CDA(ucDataCapture(data))
scope.Complete()
End Using
Catch ex As Exception
esito = False
Dim log As New Log
log.writeLog("Cda", ex)
End Try
Return esito
End Function
Private Function ucDataCapture(ByVal data As List(Of String)) As CDA
Dim CDA_D As New CDA
Try
CDA_D.codeProperty = data(1)
CDA_D.nameProperty = data(0)
CDA_D.esameProperty = data(2)
CDA_D.esitoProperty = data(3)
CDA_D.abnormalFlagProperty = data(4)
CDA_D.unitaDiMisuraProperty = data(5)
CDA_D.rangeDiRiferimentoProperty = data(6)
CDA_D.metodaProperty = data(7)
If data(8) IsNot Nothing Then
CDA_D.lowProperty = data(8)
Else
CDA_D.lowProperty = ""
End If
If data(9) IsNot Nothing Then
CDA_D.highProperty = data(9)
Else
CDA_D.highProperty = ""
End If
CDA_D.effectiveTimeProperty = data(10)
Catch ex As Exception
Dim log As New Log
log.writeLog("Cda ", ex)
End Try
Return CDA_D
End Function
Thank you for your help .
So the table should look like that or tables, because the first title does not have a low or high value, so this value will be take only where there is one .
So i have try this way....
Imports System.IO
Imports System.Xml
Module CdaParser
Sub Main()
Try
Console.Write("Enter CDA path: ")
Dim FilePath = Console.ReadLine()
If Not File.Exists(FilePath)
throw New Exception("Error! File does not exist.")
End If
'Load CDA
Dim Document = New XmlDocument()
Document.Load(FilePath)
'Load CDA
'Fetch and load namespaces
Dim DocumentNamespaces = New XmlNamespaceManager(Document.NameTable)
DocumentNamespaces.AddNamespace("xsi", "http://www.w3.org/2001/XMLSchema-instance")
Dim XPathNavigator = Document.CreateNavigator()
Dim Namespaces = XPathNavigator.GetNamespacesInScope(XmlNamespaceScope.All)
If Namespaces IsNot Nothing
For Each [Namespace] In Namespaces
DocumentNamespaces.AddNamespace([Namespace].Key, [Namespace].Value)
Next
End If
'Fetch and load namespaces
'Rule definitions that must be take from db.
Dim Rules = New Dictionary(Of String, String) From {
{"First Name", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='recordTarget'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patientRole'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patient'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='name'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='given'][namespace-uri()='urn:hl7-org:v3']"},
{"Last Name", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='recordTarget'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patientRole'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='patient'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='name'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='family'][namespace-uri()='urn:hl7-org:v3']"},
{"Test", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][4]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='entry'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='act'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='entryRelationship'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='observation'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='value'][namespace-uri()='urn:hl7-org:v3'][1]/@xsi:type"},
{"Code", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3'][1]/*[local-name()='code'][namespace-uri()='urn:hl7-org:v3'][1]/@code"},
{"Esame", "/*[local-name()='ClinicalDocument'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='structuredBody'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='component'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='section'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='text'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='table'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='thead'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='tr'][namespace-uri()='urn:hl7-org:v3']/*[local-name()='th'][namespace-uri()='urn:hl7-org:v3']"}}
'Rule definitions
'
For Each Rule In Rules
Dim Node = Document.SelectSingleNode(Rule.Value, DocumentNamespaces)
Dim Value = ""
If Node IsNot Nothing Then
Value = Node.InnerText
End If
Console.WriteLine(Rule.Key + ": " + Value)
Next
'For Each rule In Rules
' Dim node = Document.SelectNodes(rule.Value, DocumentNamespaces)
' Dim value = ""
' If node IsNot Nothing Then
' value = node.innertext
' End If
'Next
Console.ReadLine()
Catch Exception As Exception
Console.WriteLine(Exception.Message)
Console.ReadLine()
End Try
End Sub
End Module
But also i have one like this
second Xml
THE problem here it his that the table has more than rows the usually so for them i want to put one database like they were only separed for each row i wanna get -name-code-td value-low-hight-datetime.:
The result i got is :
xml vb.net oracle
xml vb.net oracle
edited Dec 19 '18 at 8:07
David Heffernan
521k348271218
521k348271218
asked Nov 16 '18 at 9:43
user10662090
Dim sections As List(Of XElement) = xe.Descendants("section").ToList()
– jdweng
Nov 16 '18 at 10:06
You can use a for each to enumerate through the list. If you xml is not well formed then you have to use an XmlReader to parse the code. You do not have to edit the xml file. I can easily fix the code late today.
– jdweng
Nov 16 '18 at 14:46
add a comment |
Dim sections As List(Of XElement) = xe.Descendants("section").ToList()
– jdweng
Nov 16 '18 at 10:06
You can use a for each to enumerate through the list. If you xml is not well formed then you have to use an XmlReader to parse the code. You do not have to edit the xml file. I can easily fix the code late today.
– jdweng
Nov 16 '18 at 14:46
Dim sections As List(Of XElement) = xe.Descendants("section").ToList()
– jdweng
Nov 16 '18 at 10:06
Dim sections As List(Of XElement) = xe.Descendants("section").ToList()
– jdweng
Nov 16 '18 at 10:06
You can use a for each to enumerate through the list. If you xml is not well formed then you have to use an XmlReader to parse the code. You do not have to edit the xml file. I can easily fix the code late today.
– jdweng
Nov 16 '18 at 14:46
You can use a for each to enumerate through the list. If you xml is not well formed then you have to use an XmlReader to parse the code. You do not have to edit the xml file. I can easily fix the code late today.
– jdweng
Nov 16 '18 at 14:46
add a comment |
2 Answers
2
active
oldest
votes
Here is how to read your xml if it is not well formed
Imports System.Data
Imports System.Xml
Imports System.Xml.Linq
Module Module1
Const FILENAME As String = "c:temptest1.xml"
Sub Main()
Dim settings As XmlReaderSettings = New XmlReaderSettings()
settings.ConformanceLevel = ConformanceLevel.Fragment
Dim reader As XmlReader = XmlReader.Create(FILENAME, settings)
Dim dt As DataTable = New DataTable()
dt.Columns.Add("ID", GetType(String))
dt.Columns.Add("Set ID", GetType(String))
dt.Columns.Add("Version", GetType(Integer))
dt.Columns.Add("Document Display Name", GetType(String))
dt.Columns.Add("Code Display Name", GetType(String))
dt.Columns.Add("Code", GetType(String))
dt.Columns.Add("Esname", GetType(String))
dt.Columns.Add("Esito", GetType(String))
dt.Columns.Add("Abnormal Flag", GetType(String))
dt.Columns.Add("Unita Di Misura", GetType(String))
dt.Columns.Add("Range Di Riferimento", GetType(String))
dt.Columns.Add("Metoda", GetType(String))
dt.Columns.Add("Low", GetType(Decimal))
dt.Columns.Add("High", GetType(Decimal))
dt.Columns.Add("Time", GetType(DateTime))
Dim uri = "urn:hl7-org:v3"
reader.ReadToFollowing("id", uri)
Dim xId As XElement = XElement.ReadFrom(reader)
Dim id As String = CType(xId.Attribute("extension"), String)
reader.ReadToFollowing("setId", uri)
Dim xSetId As XElement = XElement.ReadFrom(reader)
Dim setId As String = CType(xSetId.Attribute("extension"), String)
reader.ReadToFollowing("versionNumber", uri)
Dim xVersion As XElement = XElement.ReadFrom(reader)
Dim version As Integer = CType(xVersion.Attribute("value"), Integer)
reader.ReadToFollowing("structuredBody", uri)
While (Not reader.EOF)
If reader.Name <> "component" Then
reader.ReadToFollowing("component", uri)
End If
If Not reader.EOF Then
Dim documentComponent As XElement = CType(XElement.ReadFrom(reader), XElement)
Dim typeCode As XAttribute = documentComponent.Attribute("typeCode")
If typeCode Is Nothing Then
Console.WriteLine("Error")
Else
If CType(typeCode, String).Trim() <> "COMP" Then
Console.WriteLine("Error")
End If
End If
Dim documentCode As XElement = documentComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim documentDisplayName As String = CType(documentCode.Attribute("displayName"), String)
Dim section As XElement = documentComponent.Elements().Where(Function(x) x.Name.LocalName = "section").FirstOrDefault()
For Each codeComponent As XElement In section.Elements().Where(Function(x) x.Name.LocalName = "component")
Dim xCode As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim codeDisplayName As String = CType(xCode.Attribute("displayName"), String)
Dim code As String = CType(xCode.Attribute("code"), String)
Dim body As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "tbody").FirstOrDefault()
Dim trs As List(Of XElement) = body.Elements().Where(Function(x) x.Name.LocalName = "tr").ToList()
Dim entry As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "entry").FirstOrDefault()
Dim observations As List(Of XElement) = entry.Descendants().Where(Function(x) x.Name.LocalName = "observation").ToList()
If trs.Count <> observations.Count Then
Console.WriteLine("Error")
End If
Dim index As Integer = 0
For Each observation As XElement In observations
Dim data As New List(Of String)
data.AddRange({id, setId, version, documentDisplayName, codeDisplayName, code})
data.AddRange(trs(index).Elements.Where(Function(x) x.Name.LocalName = "td").Select(Function(x) CType(x, String)))
Dim low As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "low").FirstOrDefault()
If low Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(low.Attribute("value"), String)))
End If
Dim high As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "high").FirstOrDefault()
If high Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(high.Attribute("value"), String)))
End If
Dim effectiveTime As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "effectiveTime").FirstOrDefault()
Dim dateStr As String = CType(effectiveTime.Attribute("value"), String)
data.Add(DateTime.ParseExact(dateStr, "yyyyMMddHHmmss", System.Globalization.CultureInfo.InvariantCulture))
dt.Rows.Add(data.ToArray())
index = index + 1
Next observation
Next codeComponent
End If
End While
End Sub
End Module
2
I have edit my question, have a look @jdweng
– user10662090
Nov 26 '18 at 12:39
3
Usng xml linq you can always get any node using descendants without have the full path. When you use the older xml net library (XmlDocument and XmlElement) it requires the full path to get any node. My preference is to always use xml linq (XDocument and XElement) and not bother with saving a full path.
– jdweng
Nov 28 '18 at 9:49
3
See following posting to parse mxl recursive : stackoverflow.com/questions/28976601/…
– jdweng
Nov 28 '18 at 10:47
3
I updated the code.
– jdweng
Dec 4 '18 at 14:53
3
I updated the code.
– jdweng
Dec 4 '18 at 15:32
|
show 15 more comments
Your XML is not valid, so I modified it to a well-formed XML:
<root>
<title>TOSSICOLOGIA D'ABUSO</title>
<component>
<section>
<code code="31011" codeSystemName="Codifica Interna Laboratorio" displayName="Etanolo (urine)">
<!--TRASCODIFICA ANALISI NON DISPONIBILE-->
</code>
<text>
<paragraph>
</paragraph>
<table>
<thead>
<tr>
<th>Esame</th>
<th>Esito</th>
<th>Abnormal Flag</th>
<th>Unita di misura</th>
<th>Range di riferimento</th>
<th>Metodo</th>
</tr>
</thead>
<tbody>
<tr>
<td>Etanolo (urine)</td>
<td>< 0,01 g/l</td>
<td/>
<td/>
<td>fino a 0,35</td>
<td/>
</tr>
</tbody>
</table>
<footnote/>
<paragraph>
</paragraph>
<!--Inizio Microbiologia sezione humane readable-->
<!--Fine Microbiologia sezione humane readable-->
</text>
</section>
</component>
<component>
<section>
<code code="32000" codeSystemName="Codifica Interna Laboratorio" displayName="Creatininuria">
<!--TRASCODIFICA ANALISI NON DISPONIBILE-->
</code>
<text>
<paragraph>
<content ID="ANLNOTE---2-2">Prova autenticità campione droghe</content>
</paragraph>
<table>
<thead>
<tr>
<th>Esame</th>
<th>Esito</th>
<th>Abnormal Flag</th>
<th>Unita di misura</th>
<th>Range di riferimento</th>
<th>Metodo</th>
</tr>
</thead>
<tbody>
<tr>
<td>Creatininuria</td>
<td>193.0</td>
<td/>
<td>mg/dL</td>
<td>fino a 20: campione non idoneo
(non utilizzabile ai fini medico legali)
20 - 40: campione dubbio
sup. a 40: campione idoneo
</td>
<td/>
</tr>
</tbody>
</table>
<footnote/>
<paragraph>
</paragraph>
<!--Inizio Microbiologia sezione humane readable-->
<!--Fine Microbiologia sezione humane readable-->
</text>
</section>
</component>
</root>
You can use this code to parse the values.
Dim doc = New XmlDocument()
doc.Load("C:UsersShkelzenTarjaprojektCDR_v3_1CDRtest2.xml")
Dim components As XmlNodeList = doc.SelectNodes("root/component/section/text/table")
For c As Integer = 0 To components.Count - 1
Dim th = components(c).SelectSingleNode("thead/tr").SelectNodes("th")
Dim td = components(c).SelectSingleNode("tbody/tr").SelectNodes("td")
For i As Integer = 0 To td.Count - 1
Debug.WriteLine("component {0}: {1} => {2}", c, th(i).InnerText, td(i).InnerText)
Next
Next
Result
component 0: Esame => Etanolo (urine)
component 0: Esito => < 0,01 g/l
component 0: Abnormal Flag =>
component 0: Unita di misura =>
component 0: Range di riferimento => fino a 0,35
component 0: Metodo =>
component 1: Esame => Creatininuria
component 1: Esito => 193.0
component 1: Abnormal Flag =>
component 1: Unita di misura => mg/dL
component 1: Range di riferimento => fino a 20: campione non idoneo
(non utilizzabile ai fini medico legali)
20 - 40: campione dubbio
sup. a 40: campione idoneo
component 1: Metodo =>
Yes,doc.SelectNodes
should work if you have more elements. Unless the file size gets hundreds of MBytes.
– Wernfried Domscheit
Nov 16 '18 at 11:00
Cause i want you to have a look to my orginal xml.Because i get nothing and i load all the xml.
– user10662090
Nov 16 '18 at 11:05
Maybe you should ask the hospital for a documentation of the XML structure. And perhaps read a book "XML for beginners"
– Wernfried Domscheit
Nov 16 '18 at 12:02
anyway thank you a lot for your help @Wernfried Domscheit
– user10662090
Nov 16 '18 at 12:05
add a comment |
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Here is how to read your xml if it is not well formed
Imports System.Data
Imports System.Xml
Imports System.Xml.Linq
Module Module1
Const FILENAME As String = "c:temptest1.xml"
Sub Main()
Dim settings As XmlReaderSettings = New XmlReaderSettings()
settings.ConformanceLevel = ConformanceLevel.Fragment
Dim reader As XmlReader = XmlReader.Create(FILENAME, settings)
Dim dt As DataTable = New DataTable()
dt.Columns.Add("ID", GetType(String))
dt.Columns.Add("Set ID", GetType(String))
dt.Columns.Add("Version", GetType(Integer))
dt.Columns.Add("Document Display Name", GetType(String))
dt.Columns.Add("Code Display Name", GetType(String))
dt.Columns.Add("Code", GetType(String))
dt.Columns.Add("Esname", GetType(String))
dt.Columns.Add("Esito", GetType(String))
dt.Columns.Add("Abnormal Flag", GetType(String))
dt.Columns.Add("Unita Di Misura", GetType(String))
dt.Columns.Add("Range Di Riferimento", GetType(String))
dt.Columns.Add("Metoda", GetType(String))
dt.Columns.Add("Low", GetType(Decimal))
dt.Columns.Add("High", GetType(Decimal))
dt.Columns.Add("Time", GetType(DateTime))
Dim uri = "urn:hl7-org:v3"
reader.ReadToFollowing("id", uri)
Dim xId As XElement = XElement.ReadFrom(reader)
Dim id As String = CType(xId.Attribute("extension"), String)
reader.ReadToFollowing("setId", uri)
Dim xSetId As XElement = XElement.ReadFrom(reader)
Dim setId As String = CType(xSetId.Attribute("extension"), String)
reader.ReadToFollowing("versionNumber", uri)
Dim xVersion As XElement = XElement.ReadFrom(reader)
Dim version As Integer = CType(xVersion.Attribute("value"), Integer)
reader.ReadToFollowing("structuredBody", uri)
While (Not reader.EOF)
If reader.Name <> "component" Then
reader.ReadToFollowing("component", uri)
End If
If Not reader.EOF Then
Dim documentComponent As XElement = CType(XElement.ReadFrom(reader), XElement)
Dim typeCode As XAttribute = documentComponent.Attribute("typeCode")
If typeCode Is Nothing Then
Console.WriteLine("Error")
Else
If CType(typeCode, String).Trim() <> "COMP" Then
Console.WriteLine("Error")
End If
End If
Dim documentCode As XElement = documentComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim documentDisplayName As String = CType(documentCode.Attribute("displayName"), String)
Dim section As XElement = documentComponent.Elements().Where(Function(x) x.Name.LocalName = "section").FirstOrDefault()
For Each codeComponent As XElement In section.Elements().Where(Function(x) x.Name.LocalName = "component")
Dim xCode As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim codeDisplayName As String = CType(xCode.Attribute("displayName"), String)
Dim code As String = CType(xCode.Attribute("code"), String)
Dim body As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "tbody").FirstOrDefault()
Dim trs As List(Of XElement) = body.Elements().Where(Function(x) x.Name.LocalName = "tr").ToList()
Dim entry As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "entry").FirstOrDefault()
Dim observations As List(Of XElement) = entry.Descendants().Where(Function(x) x.Name.LocalName = "observation").ToList()
If trs.Count <> observations.Count Then
Console.WriteLine("Error")
End If
Dim index As Integer = 0
For Each observation As XElement In observations
Dim data As New List(Of String)
data.AddRange({id, setId, version, documentDisplayName, codeDisplayName, code})
data.AddRange(trs(index).Elements.Where(Function(x) x.Name.LocalName = "td").Select(Function(x) CType(x, String)))
Dim low As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "low").FirstOrDefault()
If low Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(low.Attribute("value"), String)))
End If
Dim high As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "high").FirstOrDefault()
If high Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(high.Attribute("value"), String)))
End If
Dim effectiveTime As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "effectiveTime").FirstOrDefault()
Dim dateStr As String = CType(effectiveTime.Attribute("value"), String)
data.Add(DateTime.ParseExact(dateStr, "yyyyMMddHHmmss", System.Globalization.CultureInfo.InvariantCulture))
dt.Rows.Add(data.ToArray())
index = index + 1
Next observation
Next codeComponent
End If
End While
End Sub
End Module
2
I have edit my question, have a look @jdweng
– user10662090
Nov 26 '18 at 12:39
3
Usng xml linq you can always get any node using descendants without have the full path. When you use the older xml net library (XmlDocument and XmlElement) it requires the full path to get any node. My preference is to always use xml linq (XDocument and XElement) and not bother with saving a full path.
– jdweng
Nov 28 '18 at 9:49
3
See following posting to parse mxl recursive : stackoverflow.com/questions/28976601/…
– jdweng
Nov 28 '18 at 10:47
3
I updated the code.
– jdweng
Dec 4 '18 at 14:53
3
I updated the code.
– jdweng
Dec 4 '18 at 15:32
|
show 15 more comments
Here is how to read your xml if it is not well formed
Imports System.Data
Imports System.Xml
Imports System.Xml.Linq
Module Module1
Const FILENAME As String = "c:temptest1.xml"
Sub Main()
Dim settings As XmlReaderSettings = New XmlReaderSettings()
settings.ConformanceLevel = ConformanceLevel.Fragment
Dim reader As XmlReader = XmlReader.Create(FILENAME, settings)
Dim dt As DataTable = New DataTable()
dt.Columns.Add("ID", GetType(String))
dt.Columns.Add("Set ID", GetType(String))
dt.Columns.Add("Version", GetType(Integer))
dt.Columns.Add("Document Display Name", GetType(String))
dt.Columns.Add("Code Display Name", GetType(String))
dt.Columns.Add("Code", GetType(String))
dt.Columns.Add("Esname", GetType(String))
dt.Columns.Add("Esito", GetType(String))
dt.Columns.Add("Abnormal Flag", GetType(String))
dt.Columns.Add("Unita Di Misura", GetType(String))
dt.Columns.Add("Range Di Riferimento", GetType(String))
dt.Columns.Add("Metoda", GetType(String))
dt.Columns.Add("Low", GetType(Decimal))
dt.Columns.Add("High", GetType(Decimal))
dt.Columns.Add("Time", GetType(DateTime))
Dim uri = "urn:hl7-org:v3"
reader.ReadToFollowing("id", uri)
Dim xId As XElement = XElement.ReadFrom(reader)
Dim id As String = CType(xId.Attribute("extension"), String)
reader.ReadToFollowing("setId", uri)
Dim xSetId As XElement = XElement.ReadFrom(reader)
Dim setId As String = CType(xSetId.Attribute("extension"), String)
reader.ReadToFollowing("versionNumber", uri)
Dim xVersion As XElement = XElement.ReadFrom(reader)
Dim version As Integer = CType(xVersion.Attribute("value"), Integer)
reader.ReadToFollowing("structuredBody", uri)
While (Not reader.EOF)
If reader.Name <> "component" Then
reader.ReadToFollowing("component", uri)
End If
If Not reader.EOF Then
Dim documentComponent As XElement = CType(XElement.ReadFrom(reader), XElement)
Dim typeCode As XAttribute = documentComponent.Attribute("typeCode")
If typeCode Is Nothing Then
Console.WriteLine("Error")
Else
If CType(typeCode, String).Trim() <> "COMP" Then
Console.WriteLine("Error")
End If
End If
Dim documentCode As XElement = documentComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim documentDisplayName As String = CType(documentCode.Attribute("displayName"), String)
Dim section As XElement = documentComponent.Elements().Where(Function(x) x.Name.LocalName = "section").FirstOrDefault()
For Each codeComponent As XElement In section.Elements().Where(Function(x) x.Name.LocalName = "component")
Dim xCode As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim codeDisplayName As String = CType(xCode.Attribute("displayName"), String)
Dim code As String = CType(xCode.Attribute("code"), String)
Dim body As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "tbody").FirstOrDefault()
Dim trs As List(Of XElement) = body.Elements().Where(Function(x) x.Name.LocalName = "tr").ToList()
Dim entry As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "entry").FirstOrDefault()
Dim observations As List(Of XElement) = entry.Descendants().Where(Function(x) x.Name.LocalName = "observation").ToList()
If trs.Count <> observations.Count Then
Console.WriteLine("Error")
End If
Dim index As Integer = 0
For Each observation As XElement In observations
Dim data As New List(Of String)
data.AddRange({id, setId, version, documentDisplayName, codeDisplayName, code})
data.AddRange(trs(index).Elements.Where(Function(x) x.Name.LocalName = "td").Select(Function(x) CType(x, String)))
Dim low As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "low").FirstOrDefault()
If low Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(low.Attribute("value"), String)))
End If
Dim high As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "high").FirstOrDefault()
If high Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(high.Attribute("value"), String)))
End If
Dim effectiveTime As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "effectiveTime").FirstOrDefault()
Dim dateStr As String = CType(effectiveTime.Attribute("value"), String)
data.Add(DateTime.ParseExact(dateStr, "yyyyMMddHHmmss", System.Globalization.CultureInfo.InvariantCulture))
dt.Rows.Add(data.ToArray())
index = index + 1
Next observation
Next codeComponent
End If
End While
End Sub
End Module
2
I have edit my question, have a look @jdweng
– user10662090
Nov 26 '18 at 12:39
3
Usng xml linq you can always get any node using descendants without have the full path. When you use the older xml net library (XmlDocument and XmlElement) it requires the full path to get any node. My preference is to always use xml linq (XDocument and XElement) and not bother with saving a full path.
– jdweng
Nov 28 '18 at 9:49
3
See following posting to parse mxl recursive : stackoverflow.com/questions/28976601/…
– jdweng
Nov 28 '18 at 10:47
3
I updated the code.
– jdweng
Dec 4 '18 at 14:53
3
I updated the code.
– jdweng
Dec 4 '18 at 15:32
|
show 15 more comments
Here is how to read your xml if it is not well formed
Imports System.Data
Imports System.Xml
Imports System.Xml.Linq
Module Module1
Const FILENAME As String = "c:temptest1.xml"
Sub Main()
Dim settings As XmlReaderSettings = New XmlReaderSettings()
settings.ConformanceLevel = ConformanceLevel.Fragment
Dim reader As XmlReader = XmlReader.Create(FILENAME, settings)
Dim dt As DataTable = New DataTable()
dt.Columns.Add("ID", GetType(String))
dt.Columns.Add("Set ID", GetType(String))
dt.Columns.Add("Version", GetType(Integer))
dt.Columns.Add("Document Display Name", GetType(String))
dt.Columns.Add("Code Display Name", GetType(String))
dt.Columns.Add("Code", GetType(String))
dt.Columns.Add("Esname", GetType(String))
dt.Columns.Add("Esito", GetType(String))
dt.Columns.Add("Abnormal Flag", GetType(String))
dt.Columns.Add("Unita Di Misura", GetType(String))
dt.Columns.Add("Range Di Riferimento", GetType(String))
dt.Columns.Add("Metoda", GetType(String))
dt.Columns.Add("Low", GetType(Decimal))
dt.Columns.Add("High", GetType(Decimal))
dt.Columns.Add("Time", GetType(DateTime))
Dim uri = "urn:hl7-org:v3"
reader.ReadToFollowing("id", uri)
Dim xId As XElement = XElement.ReadFrom(reader)
Dim id As String = CType(xId.Attribute("extension"), String)
reader.ReadToFollowing("setId", uri)
Dim xSetId As XElement = XElement.ReadFrom(reader)
Dim setId As String = CType(xSetId.Attribute("extension"), String)
reader.ReadToFollowing("versionNumber", uri)
Dim xVersion As XElement = XElement.ReadFrom(reader)
Dim version As Integer = CType(xVersion.Attribute("value"), Integer)
reader.ReadToFollowing("structuredBody", uri)
While (Not reader.EOF)
If reader.Name <> "component" Then
reader.ReadToFollowing("component", uri)
End If
If Not reader.EOF Then
Dim documentComponent As XElement = CType(XElement.ReadFrom(reader), XElement)
Dim typeCode As XAttribute = documentComponent.Attribute("typeCode")
If typeCode Is Nothing Then
Console.WriteLine("Error")
Else
If CType(typeCode, String).Trim() <> "COMP" Then
Console.WriteLine("Error")
End If
End If
Dim documentCode As XElement = documentComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim documentDisplayName As String = CType(documentCode.Attribute("displayName"), String)
Dim section As XElement = documentComponent.Elements().Where(Function(x) x.Name.LocalName = "section").FirstOrDefault()
For Each codeComponent As XElement In section.Elements().Where(Function(x) x.Name.LocalName = "component")
Dim xCode As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim codeDisplayName As String = CType(xCode.Attribute("displayName"), String)
Dim code As String = CType(xCode.Attribute("code"), String)
Dim body As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "tbody").FirstOrDefault()
Dim trs As List(Of XElement) = body.Elements().Where(Function(x) x.Name.LocalName = "tr").ToList()
Dim entry As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "entry").FirstOrDefault()
Dim observations As List(Of XElement) = entry.Descendants().Where(Function(x) x.Name.LocalName = "observation").ToList()
If trs.Count <> observations.Count Then
Console.WriteLine("Error")
End If
Dim index As Integer = 0
For Each observation As XElement In observations
Dim data As New List(Of String)
data.AddRange({id, setId, version, documentDisplayName, codeDisplayName, code})
data.AddRange(trs(index).Elements.Where(Function(x) x.Name.LocalName = "td").Select(Function(x) CType(x, String)))
Dim low As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "low").FirstOrDefault()
If low Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(low.Attribute("value"), String)))
End If
Dim high As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "high").FirstOrDefault()
If high Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(high.Attribute("value"), String)))
End If
Dim effectiveTime As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "effectiveTime").FirstOrDefault()
Dim dateStr As String = CType(effectiveTime.Attribute("value"), String)
data.Add(DateTime.ParseExact(dateStr, "yyyyMMddHHmmss", System.Globalization.CultureInfo.InvariantCulture))
dt.Rows.Add(data.ToArray())
index = index + 1
Next observation
Next codeComponent
End If
End While
End Sub
End Module
Here is how to read your xml if it is not well formed
Imports System.Data
Imports System.Xml
Imports System.Xml.Linq
Module Module1
Const FILENAME As String = "c:temptest1.xml"
Sub Main()
Dim settings As XmlReaderSettings = New XmlReaderSettings()
settings.ConformanceLevel = ConformanceLevel.Fragment
Dim reader As XmlReader = XmlReader.Create(FILENAME, settings)
Dim dt As DataTable = New DataTable()
dt.Columns.Add("ID", GetType(String))
dt.Columns.Add("Set ID", GetType(String))
dt.Columns.Add("Version", GetType(Integer))
dt.Columns.Add("Document Display Name", GetType(String))
dt.Columns.Add("Code Display Name", GetType(String))
dt.Columns.Add("Code", GetType(String))
dt.Columns.Add("Esname", GetType(String))
dt.Columns.Add("Esito", GetType(String))
dt.Columns.Add("Abnormal Flag", GetType(String))
dt.Columns.Add("Unita Di Misura", GetType(String))
dt.Columns.Add("Range Di Riferimento", GetType(String))
dt.Columns.Add("Metoda", GetType(String))
dt.Columns.Add("Low", GetType(Decimal))
dt.Columns.Add("High", GetType(Decimal))
dt.Columns.Add("Time", GetType(DateTime))
Dim uri = "urn:hl7-org:v3"
reader.ReadToFollowing("id", uri)
Dim xId As XElement = XElement.ReadFrom(reader)
Dim id As String = CType(xId.Attribute("extension"), String)
reader.ReadToFollowing("setId", uri)
Dim xSetId As XElement = XElement.ReadFrom(reader)
Dim setId As String = CType(xSetId.Attribute("extension"), String)
reader.ReadToFollowing("versionNumber", uri)
Dim xVersion As XElement = XElement.ReadFrom(reader)
Dim version As Integer = CType(xVersion.Attribute("value"), Integer)
reader.ReadToFollowing("structuredBody", uri)
While (Not reader.EOF)
If reader.Name <> "component" Then
reader.ReadToFollowing("component", uri)
End If
If Not reader.EOF Then
Dim documentComponent As XElement = CType(XElement.ReadFrom(reader), XElement)
Dim typeCode As XAttribute = documentComponent.Attribute("typeCode")
If typeCode Is Nothing Then
Console.WriteLine("Error")
Else
If CType(typeCode, String).Trim() <> "COMP" Then
Console.WriteLine("Error")
End If
End If
Dim documentCode As XElement = documentComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim documentDisplayName As String = CType(documentCode.Attribute("displayName"), String)
Dim section As XElement = documentComponent.Elements().Where(Function(x) x.Name.LocalName = "section").FirstOrDefault()
For Each codeComponent As XElement In section.Elements().Where(Function(x) x.Name.LocalName = "component")
Dim xCode As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "code").FirstOrDefault()
Dim codeDisplayName As String = CType(xCode.Attribute("displayName"), String)
Dim code As String = CType(xCode.Attribute("code"), String)
Dim body As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "tbody").FirstOrDefault()
Dim trs As List(Of XElement) = body.Elements().Where(Function(x) x.Name.LocalName = "tr").ToList()
Dim entry As XElement = codeComponent.Descendants().Where(Function(x) x.Name.LocalName = "entry").FirstOrDefault()
Dim observations As List(Of XElement) = entry.Descendants().Where(Function(x) x.Name.LocalName = "observation").ToList()
If trs.Count <> observations.Count Then
Console.WriteLine("Error")
End If
Dim index As Integer = 0
For Each observation As XElement In observations
Dim data As New List(Of String)
data.AddRange({id, setId, version, documentDisplayName, codeDisplayName, code})
data.AddRange(trs(index).Elements.Where(Function(x) x.Name.LocalName = "td").Select(Function(x) CType(x, String)))
Dim low As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "low").FirstOrDefault()
If low Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(low.Attribute("value"), String)))
End If
Dim high As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "high").FirstOrDefault()
If high Is Nothing Then
data.Add(Nothing)
Else
data.Add(Decimal.Parse(CType(high.Attribute("value"), String)))
End If
Dim effectiveTime As XElement = observation.Descendants().Where(Function(x) x.Name.LocalName = "effectiveTime").FirstOrDefault()
Dim dateStr As String = CType(effectiveTime.Attribute("value"), String)
data.Add(DateTime.ParseExact(dateStr, "yyyyMMddHHmmss", System.Globalization.CultureInfo.InvariantCulture))
dt.Rows.Add(data.ToArray())
index = index + 1
Next observation
Next codeComponent
End If
End While
End Sub
End Module
edited Dec 4 '18 at 15:31
answered Nov 16 '18 at 15:32
jdwengjdweng
17.7k2817
17.7k2817
2
I have edit my question, have a look @jdweng
– user10662090
Nov 26 '18 at 12:39
3
Usng xml linq you can always get any node using descendants without have the full path. When you use the older xml net library (XmlDocument and XmlElement) it requires the full path to get any node. My preference is to always use xml linq (XDocument and XElement) and not bother with saving a full path.
– jdweng
Nov 28 '18 at 9:49
3
See following posting to parse mxl recursive : stackoverflow.com/questions/28976601/…
– jdweng
Nov 28 '18 at 10:47
3
I updated the code.
– jdweng
Dec 4 '18 at 14:53
3
I updated the code.
– jdweng
Dec 4 '18 at 15:32
|
show 15 more comments
2
I have edit my question, have a look @jdweng
– user10662090
Nov 26 '18 at 12:39
3
Usng xml linq you can always get any node using descendants without have the full path. When you use the older xml net library (XmlDocument and XmlElement) it requires the full path to get any node. My preference is to always use xml linq (XDocument and XElement) and not bother with saving a full path.
– jdweng
Nov 28 '18 at 9:49
3
See following posting to parse mxl recursive : stackoverflow.com/questions/28976601/…
– jdweng
Nov 28 '18 at 10:47
3
I updated the code.
– jdweng
Dec 4 '18 at 14:53
3
I updated the code.
– jdweng
Dec 4 '18 at 15:32
2
2
I have edit my question, have a look @jdweng
– user10662090
Nov 26 '18 at 12:39
I have edit my question, have a look @jdweng
– user10662090
Nov 26 '18 at 12:39
3
3
Usng xml linq you can always get any node using descendants without have the full path. When you use the older xml net library (XmlDocument and XmlElement) it requires the full path to get any node. My preference is to always use xml linq (XDocument and XElement) and not bother with saving a full path.
– jdweng
Nov 28 '18 at 9:49
Usng xml linq you can always get any node using descendants without have the full path. When you use the older xml net library (XmlDocument and XmlElement) it requires the full path to get any node. My preference is to always use xml linq (XDocument and XElement) and not bother with saving a full path.
– jdweng
Nov 28 '18 at 9:49
3
3
See following posting to parse mxl recursive : stackoverflow.com/questions/28976601/…
– jdweng
Nov 28 '18 at 10:47
See following posting to parse mxl recursive : stackoverflow.com/questions/28976601/…
– jdweng
Nov 28 '18 at 10:47
3
3
I updated the code.
– jdweng
Dec 4 '18 at 14:53
I updated the code.
– jdweng
Dec 4 '18 at 14:53
3
3
I updated the code.
– jdweng
Dec 4 '18 at 15:32
I updated the code.
– jdweng
Dec 4 '18 at 15:32
|
show 15 more comments
Your XML is not valid, so I modified it to a well-formed XML:
<root>
<title>TOSSICOLOGIA D'ABUSO</title>
<component>
<section>
<code code="31011" codeSystemName="Codifica Interna Laboratorio" displayName="Etanolo (urine)">
<!--TRASCODIFICA ANALISI NON DISPONIBILE-->
</code>
<text>
<paragraph>
</paragraph>
<table>
<thead>
<tr>
<th>Esame</th>
<th>Esito</th>
<th>Abnormal Flag</th>
<th>Unita di misura</th>
<th>Range di riferimento</th>
<th>Metodo</th>
</tr>
</thead>
<tbody>
<tr>
<td>Etanolo (urine)</td>
<td>< 0,01 g/l</td>
<td/>
<td/>
<td>fino a 0,35</td>
<td/>
</tr>
</tbody>
</table>
<footnote/>
<paragraph>
</paragraph>
<!--Inizio Microbiologia sezione humane readable-->
<!--Fine Microbiologia sezione humane readable-->
</text>
</section>
</component>
<component>
<section>
<code code="32000" codeSystemName="Codifica Interna Laboratorio" displayName="Creatininuria">
<!--TRASCODIFICA ANALISI NON DISPONIBILE-->
</code>
<text>
<paragraph>
<content ID="ANLNOTE---2-2">Prova autenticità campione droghe</content>
</paragraph>
<table>
<thead>
<tr>
<th>Esame</th>
<th>Esito</th>
<th>Abnormal Flag</th>
<th>Unita di misura</th>
<th>Range di riferimento</th>
<th>Metodo</th>
</tr>
</thead>
<tbody>
<tr>
<td>Creatininuria</td>
<td>193.0</td>
<td/>
<td>mg/dL</td>
<td>fino a 20: campione non idoneo
(non utilizzabile ai fini medico legali)
20 - 40: campione dubbio
sup. a 40: campione idoneo
</td>
<td/>
</tr>
</tbody>
</table>
<footnote/>
<paragraph>
</paragraph>
<!--Inizio Microbiologia sezione humane readable-->
<!--Fine Microbiologia sezione humane readable-->
</text>
</section>
</component>
</root>
You can use this code to parse the values.
Dim doc = New XmlDocument()
doc.Load("C:UsersShkelzenTarjaprojektCDR_v3_1CDRtest2.xml")
Dim components As XmlNodeList = doc.SelectNodes("root/component/section/text/table")
For c As Integer = 0 To components.Count - 1
Dim th = components(c).SelectSingleNode("thead/tr").SelectNodes("th")
Dim td = components(c).SelectSingleNode("tbody/tr").SelectNodes("td")
For i As Integer = 0 To td.Count - 1
Debug.WriteLine("component {0}: {1} => {2}", c, th(i).InnerText, td(i).InnerText)
Next
Next
Result
component 0: Esame => Etanolo (urine)
component 0: Esito => < 0,01 g/l
component 0: Abnormal Flag =>
component 0: Unita di misura =>
component 0: Range di riferimento => fino a 0,35
component 0: Metodo =>
component 1: Esame => Creatininuria
component 1: Esito => 193.0
component 1: Abnormal Flag =>
component 1: Unita di misura => mg/dL
component 1: Range di riferimento => fino a 20: campione non idoneo
(non utilizzabile ai fini medico legali)
20 - 40: campione dubbio
sup. a 40: campione idoneo
component 1: Metodo =>
Yes,doc.SelectNodes
should work if you have more elements. Unless the file size gets hundreds of MBytes.
– Wernfried Domscheit
Nov 16 '18 at 11:00
Cause i want you to have a look to my orginal xml.Because i get nothing and i load all the xml.
– user10662090
Nov 16 '18 at 11:05
Maybe you should ask the hospital for a documentation of the XML structure. And perhaps read a book "XML for beginners"
– Wernfried Domscheit
Nov 16 '18 at 12:02
anyway thank you a lot for your help @Wernfried Domscheit
– user10662090
Nov 16 '18 at 12:05
add a comment |
Your XML is not valid, so I modified it to a well-formed XML:
<root>
<title>TOSSICOLOGIA D'ABUSO</title>
<component>
<section>
<code code="31011" codeSystemName="Codifica Interna Laboratorio" displayName="Etanolo (urine)">
<!--TRASCODIFICA ANALISI NON DISPONIBILE-->
</code>
<text>
<paragraph>
</paragraph>
<table>
<thead>
<tr>
<th>Esame</th>
<th>Esito</th>
<th>Abnormal Flag</th>
<th>Unita di misura</th>
<th>Range di riferimento</th>
<th>Metodo</th>
</tr>
</thead>
<tbody>
<tr>
<td>Etanolo (urine)</td>
<td>< 0,01 g/l</td>
<td/>
<td/>
<td>fino a 0,35</td>
<td/>
</tr>
</tbody>
</table>
<footnote/>
<paragraph>
</paragraph>
<!--Inizio Microbiologia sezione humane readable-->
<!--Fine Microbiologia sezione humane readable-->
</text>
</section>
</component>
<component>
<section>
<code code="32000" codeSystemName="Codifica Interna Laboratorio" displayName="Creatininuria">
<!--TRASCODIFICA ANALISI NON DISPONIBILE-->
</code>
<text>
<paragraph>
<content ID="ANLNOTE---2-2">Prova autenticità campione droghe</content>
</paragraph>
<table>
<thead>
<tr>
<th>Esame</th>
<th>Esito</th>
<th>Abnormal Flag</th>
<th>Unita di misura</th>
<th>Range di riferimento</th>
<th>Metodo</th>
</tr>
</thead>
<tbody>
<tr>
<td>Creatininuria</td>
<td>193.0</td>
<td/>
<td>mg/dL</td>
<td>fino a 20: campione non idoneo
(non utilizzabile ai fini medico legali)
20 - 40: campione dubbio
sup. a 40: campione idoneo
</td>
<td/>
</tr>
</tbody>
</table>
<footnote/>
<paragraph>
</paragraph>
<!--Inizio Microbiologia sezione humane readable-->
<!--Fine Microbiologia sezione humane readable-->
</text>
</section>
</component>
</root>
You can use this code to parse the values.
Dim doc = New XmlDocument()
doc.Load("C:UsersShkelzenTarjaprojektCDR_v3_1CDRtest2.xml")
Dim components As XmlNodeList = doc.SelectNodes("root/component/section/text/table")
For c As Integer = 0 To components.Count - 1
Dim th = components(c).SelectSingleNode("thead/tr").SelectNodes("th")
Dim td = components(c).SelectSingleNode("tbody/tr").SelectNodes("td")
For i As Integer = 0 To td.Count - 1
Debug.WriteLine("component {0}: {1} => {2}", c, th(i).InnerText, td(i).InnerText)
Next
Next
Result
component 0: Esame => Etanolo (urine)
component 0: Esito => < 0,01 g/l
component 0: Abnormal Flag =>
component 0: Unita di misura =>
component 0: Range di riferimento => fino a 0,35
component 0: Metodo =>
component 1: Esame => Creatininuria
component 1: Esito => 193.0
component 1: Abnormal Flag =>
component 1: Unita di misura => mg/dL
component 1: Range di riferimento => fino a 20: campione non idoneo
(non utilizzabile ai fini medico legali)
20 - 40: campione dubbio
sup. a 40: campione idoneo
component 1: Metodo =>
Yes,doc.SelectNodes
should work if you have more elements. Unless the file size gets hundreds of MBytes.
– Wernfried Domscheit
Nov 16 '18 at 11:00
Cause i want you to have a look to my orginal xml.Because i get nothing and i load all the xml.
– user10662090
Nov 16 '18 at 11:05
Maybe you should ask the hospital for a documentation of the XML structure. And perhaps read a book "XML for beginners"
– Wernfried Domscheit
Nov 16 '18 at 12:02
anyway thank you a lot for your help @Wernfried Domscheit
– user10662090
Nov 16 '18 at 12:05
add a comment |
Your XML is not valid, so I modified it to a well-formed XML:
<root>
<title>TOSSICOLOGIA D'ABUSO</title>
<component>
<section>
<code code="31011" codeSystemName="Codifica Interna Laboratorio" displayName="Etanolo (urine)">
<!--TRASCODIFICA ANALISI NON DISPONIBILE-->
</code>
<text>
<paragraph>
</paragraph>
<table>
<thead>
<tr>
<th>Esame</th>
<th>Esito</th>
<th>Abnormal Flag</th>
<th>Unita di misura</th>
<th>Range di riferimento</th>
<th>Metodo</th>
</tr>
</thead>
<tbody>
<tr>
<td>Etanolo (urine)</td>
<td>< 0,01 g/l</td>
<td/>
<td/>
<td>fino a 0,35</td>
<td/>
</tr>
</tbody>
</table>
<footnote/>
<paragraph>
</paragraph>
<!--Inizio Microbiologia sezione humane readable-->
<!--Fine Microbiologia sezione humane readable-->
</text>
</section>
</component>
<component>
<section>
<code code="32000" codeSystemName="Codifica Interna Laboratorio" displayName="Creatininuria">
<!--TRASCODIFICA ANALISI NON DISPONIBILE-->
</code>
<text>
<paragraph>
<content ID="ANLNOTE---2-2">Prova autenticità campione droghe</content>
</paragraph>
<table>
<thead>
<tr>
<th>Esame</th>
<th>Esito</th>
<th>Abnormal Flag</th>
<th>Unita di misura</th>
<th>Range di riferimento</th>
<th>Metodo</th>
</tr>
</thead>
<tbody>
<tr>
<td>Creatininuria</td>
<td>193.0</td>
<td/>
<td>mg/dL</td>
<td>fino a 20: campione non idoneo
(non utilizzabile ai fini medico legali)
20 - 40: campione dubbio
sup. a 40: campione idoneo
</td>
<td/>
</tr>
</tbody>
</table>
<footnote/>
<paragraph>
</paragraph>
<!--Inizio Microbiologia sezione humane readable-->
<!--Fine Microbiologia sezione humane readable-->
</text>
</section>
</component>
</root>
You can use this code to parse the values.
Dim doc = New XmlDocument()
doc.Load("C:UsersShkelzenTarjaprojektCDR_v3_1CDRtest2.xml")
Dim components As XmlNodeList = doc.SelectNodes("root/component/section/text/table")
For c As Integer = 0 To components.Count - 1
Dim th = components(c).SelectSingleNode("thead/tr").SelectNodes("th")
Dim td = components(c).SelectSingleNode("tbody/tr").SelectNodes("td")
For i As Integer = 0 To td.Count - 1
Debug.WriteLine("component {0}: {1} => {2}", c, th(i).InnerText, td(i).InnerText)
Next
Next
Result
component 0: Esame => Etanolo (urine)
component 0: Esito => < 0,01 g/l
component 0: Abnormal Flag =>
component 0: Unita di misura =>
component 0: Range di riferimento => fino a 0,35
component 0: Metodo =>
component 1: Esame => Creatininuria
component 1: Esito => 193.0
component 1: Abnormal Flag =>
component 1: Unita di misura => mg/dL
component 1: Range di riferimento => fino a 20: campione non idoneo
(non utilizzabile ai fini medico legali)
20 - 40: campione dubbio
sup. a 40: campione idoneo
component 1: Metodo =>
Your XML is not valid, so I modified it to a well-formed XML:
<root>
<title>TOSSICOLOGIA D'ABUSO</title>
<component>
<section>
<code code="31011" codeSystemName="Codifica Interna Laboratorio" displayName="Etanolo (urine)">
<!--TRASCODIFICA ANALISI NON DISPONIBILE-->
</code>
<text>
<paragraph>
</paragraph>
<table>
<thead>
<tr>
<th>Esame</th>
<th>Esito</th>
<th>Abnormal Flag</th>
<th>Unita di misura</th>
<th>Range di riferimento</th>
<th>Metodo</th>
</tr>
</thead>
<tbody>
<tr>
<td>Etanolo (urine)</td>
<td>< 0,01 g/l</td>
<td/>
<td/>
<td>fino a 0,35</td>
<td/>
</tr>
</tbody>
</table>
<footnote/>
<paragraph>
</paragraph>
<!--Inizio Microbiologia sezione humane readable-->
<!--Fine Microbiologia sezione humane readable-->
</text>
</section>
</component>
<component>
<section>
<code code="32000" codeSystemName="Codifica Interna Laboratorio" displayName="Creatininuria">
<!--TRASCODIFICA ANALISI NON DISPONIBILE-->
</code>
<text>
<paragraph>
<content ID="ANLNOTE---2-2">Prova autenticità campione droghe</content>
</paragraph>
<table>
<thead>
<tr>
<th>Esame</th>
<th>Esito</th>
<th>Abnormal Flag</th>
<th>Unita di misura</th>
<th>Range di riferimento</th>
<th>Metodo</th>
</tr>
</thead>
<tbody>
<tr>
<td>Creatininuria</td>
<td>193.0</td>
<td/>
<td>mg/dL</td>
<td>fino a 20: campione non idoneo
(non utilizzabile ai fini medico legali)
20 - 40: campione dubbio
sup. a 40: campione idoneo
</td>
<td/>
</tr>
</tbody>
</table>
<footnote/>
<paragraph>
</paragraph>
<!--Inizio Microbiologia sezione humane readable-->
<!--Fine Microbiologia sezione humane readable-->
</text>
</section>
</component>
</root>
You can use this code to parse the values.
Dim doc = New XmlDocument()
doc.Load("C:UsersShkelzenTarjaprojektCDR_v3_1CDRtest2.xml")
Dim components As XmlNodeList = doc.SelectNodes("root/component/section/text/table")
For c As Integer = 0 To components.Count - 1
Dim th = components(c).SelectSingleNode("thead/tr").SelectNodes("th")
Dim td = components(c).SelectSingleNode("tbody/tr").SelectNodes("td")
For i As Integer = 0 To td.Count - 1
Debug.WriteLine("component {0}: {1} => {2}", c, th(i).InnerText, td(i).InnerText)
Next
Next
Result
component 0: Esame => Etanolo (urine)
component 0: Esito => < 0,01 g/l
component 0: Abnormal Flag =>
component 0: Unita di misura =>
component 0: Range di riferimento => fino a 0,35
component 0: Metodo =>
component 1: Esame => Creatininuria
component 1: Esito => 193.0
component 1: Abnormal Flag =>
component 1: Unita di misura => mg/dL
component 1: Range di riferimento => fino a 20: campione non idoneo
(non utilizzabile ai fini medico legali)
20 - 40: campione dubbio
sup. a 40: campione idoneo
component 1: Metodo =>
answered Nov 16 '18 at 10:33
Wernfried DomscheitWernfried Domscheit
24.8k43161
24.8k43161
Yes,doc.SelectNodes
should work if you have more elements. Unless the file size gets hundreds of MBytes.
– Wernfried Domscheit
Nov 16 '18 at 11:00
Cause i want you to have a look to my orginal xml.Because i get nothing and i load all the xml.
– user10662090
Nov 16 '18 at 11:05
Maybe you should ask the hospital for a documentation of the XML structure. And perhaps read a book "XML for beginners"
– Wernfried Domscheit
Nov 16 '18 at 12:02
anyway thank you a lot for your help @Wernfried Domscheit
– user10662090
Nov 16 '18 at 12:05
add a comment |
Yes,doc.SelectNodes
should work if you have more elements. Unless the file size gets hundreds of MBytes.
– Wernfried Domscheit
Nov 16 '18 at 11:00
Cause i want you to have a look to my orginal xml.Because i get nothing and i load all the xml.
– user10662090
Nov 16 '18 at 11:05
Maybe you should ask the hospital for a documentation of the XML structure. And perhaps read a book "XML for beginners"
– Wernfried Domscheit
Nov 16 '18 at 12:02
anyway thank you a lot for your help @Wernfried Domscheit
– user10662090
Nov 16 '18 at 12:05
Yes,
doc.SelectNodes
should work if you have more elements. Unless the file size gets hundreds of MBytes.– Wernfried Domscheit
Nov 16 '18 at 11:00
Yes,
doc.SelectNodes
should work if you have more elements. Unless the file size gets hundreds of MBytes.– Wernfried Domscheit
Nov 16 '18 at 11:00
Cause i want you to have a look to my orginal xml.Because i get nothing and i load all the xml.
– user10662090
Nov 16 '18 at 11:05
Cause i want you to have a look to my orginal xml.Because i get nothing and i load all the xml.
– user10662090
Nov 16 '18 at 11:05
Maybe you should ask the hospital for a documentation of the XML structure. And perhaps read a book "XML for beginners"
– Wernfried Domscheit
Nov 16 '18 at 12:02
Maybe you should ask the hospital for a documentation of the XML structure. And perhaps read a book "XML for beginners"
– Wernfried Domscheit
Nov 16 '18 at 12:02
anyway thank you a lot for your help @Wernfried Domscheit
– user10662090
Nov 16 '18 at 12:05
anyway thank you a lot for your help @Wernfried Domscheit
– user10662090
Nov 16 '18 at 12:05
add a comment |
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Dim sections As List(Of XElement) = xe.Descendants("section").ToList()
– jdweng
Nov 16 '18 at 10:06
You can use a for each to enumerate through the list. If you xml is not well formed then you have to use an XmlReader to parse the code. You do not have to edit the xml file. I can easily fix the code late today.
– jdweng
Nov 16 '18 at 14:46