How to run Matlab batch script and save the results











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#!/bin/bash
###########################
#
#PBS -l nodes=1:ppn=12
#PBS -l walltime=00:30:00


XXXXXXXXXx and below is my script details about running matlab
I want to save the results from the trial.m however it does not work.



export JOBID=`echo "${PBS_JOBID}" | cut -d'.' -f1`
cd ${PBS_O_WORKDIR}
module load matlab/R2017b
matlab
trial.m


My script name: trial.m
How to save the results from trial.m to my environment?
In my trial.m matlab file, I have the following codes to display my results, does this work? betas and values are two vector of numbers



disp(betas); 
disp(values);
save('parameters.mat','betas','values');


In addition, trial.m needs to call external functions that I saved in the same file, can it call automatically?










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    up vote
    2
    down vote

    favorite
    1












    #!/bin/bash
    ###########################
    #
    #PBS -l nodes=1:ppn=12
    #PBS -l walltime=00:30:00


    XXXXXXXXXx and below is my script details about running matlab
    I want to save the results from the trial.m however it does not work.



    export JOBID=`echo "${PBS_JOBID}" | cut -d'.' -f1`
    cd ${PBS_O_WORKDIR}
    module load matlab/R2017b
    matlab
    trial.m


    My script name: trial.m
    How to save the results from trial.m to my environment?
    In my trial.m matlab file, I have the following codes to display my results, does this work? betas and values are two vector of numbers



    disp(betas); 
    disp(values);
    save('parameters.mat','betas','values');


    In addition, trial.m needs to call external functions that I saved in the same file, can it call automatically?










    share|improve this question


























      up vote
      2
      down vote

      favorite
      1









      up vote
      2
      down vote

      favorite
      1






      1





      #!/bin/bash
      ###########################
      #
      #PBS -l nodes=1:ppn=12
      #PBS -l walltime=00:30:00


      XXXXXXXXXx and below is my script details about running matlab
      I want to save the results from the trial.m however it does not work.



      export JOBID=`echo "${PBS_JOBID}" | cut -d'.' -f1`
      cd ${PBS_O_WORKDIR}
      module load matlab/R2017b
      matlab
      trial.m


      My script name: trial.m
      How to save the results from trial.m to my environment?
      In my trial.m matlab file, I have the following codes to display my results, does this work? betas and values are two vector of numbers



      disp(betas); 
      disp(values);
      save('parameters.mat','betas','values');


      In addition, trial.m needs to call external functions that I saved in the same file, can it call automatically?










      share|improve this question















      #!/bin/bash
      ###########################
      #
      #PBS -l nodes=1:ppn=12
      #PBS -l walltime=00:30:00


      XXXXXXXXXx and below is my script details about running matlab
      I want to save the results from the trial.m however it does not work.



      export JOBID=`echo "${PBS_JOBID}" | cut -d'.' -f1`
      cd ${PBS_O_WORKDIR}
      module load matlab/R2017b
      matlab
      trial.m


      My script name: trial.m
      How to save the results from trial.m to my environment?
      In my trial.m matlab file, I have the following codes to display my results, does this work? betas and values are two vector of numbers



      disp(betas); 
      disp(values);
      save('parameters.mat','betas','values');


      In addition, trial.m needs to call external functions that I saved in the same file, can it call automatically?







      bash matlab sh






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      edited Nov 9 at 6:21









      Compo

      15.2k3926




      15.2k3926










      asked Nov 9 at 3:39









      vera_kkk

      112




      112
























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          Invoke MATLAB and execute trial.m via the following command:



          matlab -r trial -logfile logfile.log


          Make sure trial.m exits MATLAB when it finishes, to continue executing any post-processing steps.



          If preparing to submit the MATLAB job to a cluster, use the parrallel computing toolbox.



          Save the results of trial.m to the environment by calling the save function to create a .MAT file.
          NOTE: To access the file using other software, save in CSV format by calling csvwrite.



          csvwrite('betas.csv',betas);
          csvwrite('values.csv',values);





          share|improve this answer























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            up vote
            4
            down vote













            Invoke MATLAB and execute trial.m via the following command:



            matlab -r trial -logfile logfile.log


            Make sure trial.m exits MATLAB when it finishes, to continue executing any post-processing steps.



            If preparing to submit the MATLAB job to a cluster, use the parrallel computing toolbox.



            Save the results of trial.m to the environment by calling the save function to create a .MAT file.
            NOTE: To access the file using other software, save in CSV format by calling csvwrite.



            csvwrite('betas.csv',betas);
            csvwrite('values.csv',values);





            share|improve this answer



























              up vote
              4
              down vote













              Invoke MATLAB and execute trial.m via the following command:



              matlab -r trial -logfile logfile.log


              Make sure trial.m exits MATLAB when it finishes, to continue executing any post-processing steps.



              If preparing to submit the MATLAB job to a cluster, use the parrallel computing toolbox.



              Save the results of trial.m to the environment by calling the save function to create a .MAT file.
              NOTE: To access the file using other software, save in CSV format by calling csvwrite.



              csvwrite('betas.csv',betas);
              csvwrite('values.csv',values);





              share|improve this answer

























                up vote
                4
                down vote










                up vote
                4
                down vote









                Invoke MATLAB and execute trial.m via the following command:



                matlab -r trial -logfile logfile.log


                Make sure trial.m exits MATLAB when it finishes, to continue executing any post-processing steps.



                If preparing to submit the MATLAB job to a cluster, use the parrallel computing toolbox.



                Save the results of trial.m to the environment by calling the save function to create a .MAT file.
                NOTE: To access the file using other software, save in CSV format by calling csvwrite.



                csvwrite('betas.csv',betas);
                csvwrite('values.csv',values);





                share|improve this answer














                Invoke MATLAB and execute trial.m via the following command:



                matlab -r trial -logfile logfile.log


                Make sure trial.m exits MATLAB when it finishes, to continue executing any post-processing steps.



                If preparing to submit the MATLAB job to a cluster, use the parrallel computing toolbox.



                Save the results of trial.m to the environment by calling the save function to create a .MAT file.
                NOTE: To access the file using other software, save in CSV format by calling csvwrite.



                csvwrite('betas.csv',betas);
                csvwrite('values.csv',values);






                share|improve this answer














                share|improve this answer



                share|improve this answer








                edited Nov 9 at 11:51









                LegendaryJohnDoe

                172




                172










                answered Nov 9 at 6:35









                Azim

                6,46563254




                6,46563254






























                     

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