Not able to build and install NumPy on AIX6.1
0
I am trying to install Data Science packages on AIX6.1(one of Unix os).
I have tried using PIP but it was not properly built and installed, some .so files were not compiled properly after which I tried installing from the source in which I am not able to build it properly.
I have GCC version 6.3, Fortran compiler installed.
the command is given:
# python setup.py build
the command was executed with errors. Please find below the error log.
gcc: /tmp/tmpn4o642va/source.c
/tmp/tmpn4o642va/source.c:1:19: fatal error: cblas.h: No such file or directory
#include <cblas.h>
^
compilation terminated.
/tmp/tmpn4o642va/source.c:1:19: fatal error: cblas.h: No such file or directory
#include <cblas.h>
^
compilation terminated.
some error in the middle part of the whole log:
openblas_clapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas,lapack not found in ['/usr/bin/../../opt/freeware/lib', '/opt/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
.
.
.
/opt/freeware/lib64/python3.6/distutils/dist.py:261: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
get_default_fcompiler: matching types: '['ibm', 'gnu', 'gnu95']'
customize IBMFCompiler
Could not locate executable xlf90
Could not locate executable xlf
customize GnuFCompiler
Could not locate executable g77
Could not locate executable f77
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
At the very end of the whole log the error is:
compiling C sources
C compiler: /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -I/usr/include -I/opt/freeware/include -I/opt/freeware/include/ncurses -DAIX_GENUINE_CPLUSCPLUS -D_LINUX_SOURCE_COMPAT -Wl,-brtl -I/usr/include -I/opt/freeware/include -I/opt/freeware/include/ncurses -DAIX_GENUINE_CPLUSCPLUS -D_LINUX_SOURCE_COMPAT -Wl,-brtl
compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_LARGE_FILES -Inumpy/core/include -Ibuild/src.aix-6.1-3.6/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/freeware/include/python3.6m -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -c'
/opt/freeware/lib/python3.6/config-3.6m/ld_so_aix /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -bI:/opt/freeware/lib/python3.6/config-3.6m/python.exp -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o -L/opt/freeware/lib64 -Lbuild/temp.aix-6.1-3.6 -lm -o build/lib.aix-6.1-3.6/numpy/core/_dummy.so
ld: 0711-738 ERROR: Input file build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o:
XCOFF32 object files are not allowed in 64-bit mode.
collect2: error: ld returned 8 exit status
ld: 0711-738 ERROR: Input file build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o:
XCOFF32 object files are not allowed in 64-bit mode.
collect2: error: ld returned 8 exit status
error: Command "/opt/freeware/lib/python3.6/config-3.6m/ld_so_aix /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -bI:/opt/freeware/lib/python3.6/config-3.6m/python.exp -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o -L/opt/freeware/lib64 -Lbuild/temp.aix-6.1-3.6 -lm -o build/lib.aix-6.1-3.6/numpy/core/_dummy.so" failed with exit status 1
Thanks a lot!!!
python numpy gfortran aix openblas
edited Nov 21 '18 at 7:53
Mehrdad Pedramfar
6,34411643
asked Nov 21 '18 at 7:47
Jasmeet SinghJasmeet Singh
112
add a comment |
0
I am trying to install Data Science packages on AIX6.1(one of Unix os).
I have tried using PIP but it was not properly built and installed, some .so files were not compiled properly after which I tried installing from the source in which I am not able to build it properly.
I have GCC version 6.3, Fortran compiler installed.
the command is given:
# python setup.py build
the command was executed with errors. Please find below the error log.
gcc: /tmp/tmpn4o642va/source.c
/tmp/tmpn4o642va/source.c:1:19: fatal error: cblas.h: No such file or directory
#include <cblas.h>
^
compilation terminated.
/tmp/tmpn4o642va/source.c:1:19: fatal error: cblas.h: No such file or directory
#include <cblas.h>
^
compilation terminated.
some error in the middle part of the whole log:
openblas_clapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas,lapack not found in ['/usr/bin/../../opt/freeware/lib', '/opt/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
.
.
.
/opt/freeware/lib64/python3.6/distutils/dist.py:261: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
get_default_fcompiler: matching types: '['ibm', 'gnu', 'gnu95']'
customize IBMFCompiler
Could not locate executable xlf90
Could not locate executable xlf
customize GnuFCompiler
Could not locate executable g77
Could not locate executable f77
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
At the very end of the whole log the error is:
compiling C sources
C compiler: /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -I/usr/include -I/opt/freeware/include -I/opt/freeware/include/ncurses -DAIX_GENUINE_CPLUSCPLUS -D_LINUX_SOURCE_COMPAT -Wl,-brtl -I/usr/include -I/opt/freeware/include -I/opt/freeware/include/ncurses -DAIX_GENUINE_CPLUSCPLUS -D_LINUX_SOURCE_COMPAT -Wl,-brtl
compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_LARGE_FILES -Inumpy/core/include -Ibuild/src.aix-6.1-3.6/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/freeware/include/python3.6m -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -c'
/opt/freeware/lib/python3.6/config-3.6m/ld_so_aix /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -bI:/opt/freeware/lib/python3.6/config-3.6m/python.exp -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o -L/opt/freeware/lib64 -Lbuild/temp.aix-6.1-3.6 -lm -o build/lib.aix-6.1-3.6/numpy/core/_dummy.so
ld: 0711-738 ERROR: Input file build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o:
XCOFF32 object files are not allowed in 64-bit mode.
collect2: error: ld returned 8 exit status
ld: 0711-738 ERROR: Input file build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o:
XCOFF32 object files are not allowed in 64-bit mode.
collect2: error: ld returned 8 exit status
error: Command "/opt/freeware/lib/python3.6/config-3.6m/ld_so_aix /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -bI:/opt/freeware/lib/python3.6/config-3.6m/python.exp -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o -L/opt/freeware/lib64 -Lbuild/temp.aix-6.1-3.6 -lm -o build/lib.aix-6.1-3.6/numpy/core/_dummy.so" failed with exit status 1
Thanks a lot!!!
python numpy gfortran aix openblas
edited Nov 21 '18 at 7:53
Mehrdad Pedramfar
6,34411643
asked Nov 21 '18 at 7:47
Jasmeet SinghJasmeet Singh
112
add a comment |
0
0
0
I am trying to install Data Science packages on AIX6.1(one of Unix os).
I have tried using PIP but it was not properly built and installed, some .so files were not compiled properly after which I tried installing from the source in which I am not able to build it properly.
I have GCC version 6.3, Fortran compiler installed.
the command is given:
# python setup.py build
the command was executed with errors. Please find below the error log.
gcc: /tmp/tmpn4o642va/source.c
/tmp/tmpn4o642va/source.c:1:19: fatal error: cblas.h: No such file or directory
#include <cblas.h>
^
compilation terminated.
/tmp/tmpn4o642va/source.c:1:19: fatal error: cblas.h: No such file or directory
#include <cblas.h>
^
compilation terminated.
some error in the middle part of the whole log:
openblas_clapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas,lapack not found in ['/usr/bin/../../opt/freeware/lib', '/opt/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
.
.
.
/opt/freeware/lib64/python3.6/distutils/dist.py:261: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
get_default_fcompiler: matching types: '['ibm', 'gnu', 'gnu95']'
customize IBMFCompiler
Could not locate executable xlf90
Could not locate executable xlf
customize GnuFCompiler
Could not locate executable g77
Could not locate executable f77
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
At the very end of the whole log the error is:
compiling C sources
C compiler: /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -I/usr/include -I/opt/freeware/include -I/opt/freeware/include/ncurses -DAIX_GENUINE_CPLUSCPLUS -D_LINUX_SOURCE_COMPAT -Wl,-brtl -I/usr/include -I/opt/freeware/include -I/opt/freeware/include/ncurses -DAIX_GENUINE_CPLUSCPLUS -D_LINUX_SOURCE_COMPAT -Wl,-brtl
compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_LARGE_FILES -Inumpy/core/include -Ibuild/src.aix-6.1-3.6/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/freeware/include/python3.6m -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -c'
/opt/freeware/lib/python3.6/config-3.6m/ld_so_aix /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -bI:/opt/freeware/lib/python3.6/config-3.6m/python.exp -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o -L/opt/freeware/lib64 -Lbuild/temp.aix-6.1-3.6 -lm -o build/lib.aix-6.1-3.6/numpy/core/_dummy.so
ld: 0711-738 ERROR: Input file build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o:
XCOFF32 object files are not allowed in 64-bit mode.
collect2: error: ld returned 8 exit status
ld: 0711-738 ERROR: Input file build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o:
XCOFF32 object files are not allowed in 64-bit mode.
collect2: error: ld returned 8 exit status
error: Command "/opt/freeware/lib/python3.6/config-3.6m/ld_so_aix /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -bI:/opt/freeware/lib/python3.6/config-3.6m/python.exp -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o -L/opt/freeware/lib64 -Lbuild/temp.aix-6.1-3.6 -lm -o build/lib.aix-6.1-3.6/numpy/core/_dummy.so" failed with exit status 1
Thanks a lot!!!
python numpy gfortran aix openblas
edited Nov 21 '18 at 7:53
Mehrdad Pedramfar
6,34411643
asked Nov 21 '18 at 7:47
Jasmeet SinghJasmeet Singh
112
I am trying to install Data Science packages on AIX6.1(one of Unix os).
I have tried using PIP but it was not properly built and installed, some .so files were not compiled properly after which I tried installing from the source in which I am not able to build it properly.
I have GCC version 6.3, Fortran compiler installed.
the command is given:
# python setup.py build
the command was executed with errors. Please find below the error log.
gcc: /tmp/tmpn4o642va/source.c
/tmp/tmpn4o642va/source.c:1:19: fatal error: cblas.h: No such file or directory
#include <cblas.h>
^
compilation terminated.
/tmp/tmpn4o642va/source.c:1:19: fatal error: cblas.h: No such file or directory
#include <cblas.h>
^
compilation terminated.
some error in the middle part of the whole log:
openblas_clapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas,lapack not found in ['/usr/bin/../../opt/freeware/lib', '/opt/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
.
.
.
/opt/freeware/lib64/python3.6/distutils/dist.py:261: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
get_default_fcompiler: matching types: '['ibm', 'gnu', 'gnu95']'
customize IBMFCompiler
Could not locate executable xlf90
Could not locate executable xlf
customize GnuFCompiler
Could not locate executable g77
Could not locate executable f77
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
At the very end of the whole log the error is:
compiling C sources
C compiler: /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -I/usr/include -I/opt/freeware/include -I/opt/freeware/include/ncurses -DAIX_GENUINE_CPLUSCPLUS -D_LINUX_SOURCE_COMPAT -Wl,-brtl -I/usr/include -I/opt/freeware/include -I/opt/freeware/include/ncurses -DAIX_GENUINE_CPLUSCPLUS -D_LINUX_SOURCE_COMPAT -Wl,-brtl
compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_LARGE_FILES -Inumpy/core/include -Ibuild/src.aix-6.1-3.6/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/freeware/include/python3.6m -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -Ibuild/src.aix-6.1-3.6/numpy/core/src/private -Ibuild/src.aix-6.1-3.6/numpy/core/src/npymath -c'
/opt/freeware/lib/python3.6/config-3.6m/ld_so_aix /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -bI:/opt/freeware/lib/python3.6/config-3.6m/python.exp -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o -L/opt/freeware/lib64 -Lbuild/temp.aix-6.1-3.6 -lm -o build/lib.aix-6.1-3.6/numpy/core/_dummy.so
ld: 0711-738 ERROR: Input file build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o:
XCOFF32 object files are not allowed in 64-bit mode.
collect2: error: ld returned 8 exit status
ld: 0711-738 ERROR: Input file build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o:
XCOFF32 object files are not allowed in 64-bit mode.
collect2: error: ld returned 8 exit status
error: Command "/opt/freeware/lib/python3.6/config-3.6m/ld_so_aix /opt/freeware/bin/gcc -maix64 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -bI:/opt/freeware/lib/python3.6/config-3.6m/python.exp -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib -L. -L/usr/lib/threads -L/opt/freeware/lib64 -L/opt/freeware/lib -L/usr/lib64 -L/usr/lib build/temp.aix-6.1-3.6/numpy/core/src/dummymodule.o -L/opt/freeware/lib64 -Lbuild/temp.aix-6.1-3.6 -lm -o build/lib.aix-6.1-3.6/numpy/core/_dummy.so" failed with exit status 1
Thanks a lot!!!
python numpy gfortran aix openblas
python numpy gfortran aix openblas
edited Nov 21 '18 at 7:53
Mehrdad Pedramfar
6,34411643
asked Nov 21 '18 at 7:47
Jasmeet SinghJasmeet Singh
112
edited Nov 21 '18 at 7:53
Mehrdad Pedramfar
6,34411643
asked Nov 21 '18 at 7:47
Jasmeet SinghJasmeet Singh
112
edited Nov 21 '18 at 7:53
Mehrdad Pedramfar
6,34411643
edited Nov 21 '18 at 7:53
Mehrdad Pedramfar
6,34411643
edited Nov 21 '18 at 7:53
Mehrdad Pedramfar
6,34411643
6,34411643
asked Nov 21 '18 at 7:47
Jasmeet SinghJasmeet Singh
112
asked Nov 21 '18 at 7:47
Jasmeet SinghJasmeet Singh
112
asked Nov 21 '18 at 7:47
Jasmeet SinghJasmeet Singh
112
112
add a comment |
add a comment |
0
active
oldest
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