create a sequence (group) of numbers from the 1-ibs matrix
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I'm a newbie with R and I'm trying to generate this kind of sequence (see below) from a matrix and then estimate an error rate. Just to let you know, I have triplicates for each number, that's why I have X1, X1.1 and X1.2
X1 X1.1 X1.2
X1 0.000000000 NA NA
X1.1 0.013452613 0.000000000 NA
X1.2 0.008110273 0.007781853 0
X73 X73.1 X73.2
X73 0.00000000 NA NA
X73.1 0.05336268 0.00000000 NA
X73.2 0.04450677 0.05150902 0
and so on...
I applied this code (NB: 261 is the number of samples)
mat <- 1-ibsmat
mat1 <- mat[-99:-100,-99:-100]
x <- seq(1,261,3)
err.r <- rep(NA, length(x))
for (i in 1:(length(x)-1)){
k <- x[i]
k1=k+2
ibx <- mat1[k:k1,k:k1]
print(ibx)
err.r[i] <- mean(ibx[lower.tri(ibx)])
}
errorrate <- mean(na.omit(err.r))
Everything works fine until the numbers starts to overlap with others (see example below).
X91.1 X91.2 X12
X91.1 0.00000000 NA NA
X91.2 0.01587456 0.0000000 NA
X12 0.10722157 0.1139528 0
Do you have any clue?
python r windows matrix
asked Nov 21 '18 at 23:03
N MeriamN Meriam
145
add a comment |
I'm a newbie with R and I'm trying to generate this kind of sequence (see below) from a matrix and then estimate an error rate. Just to let you know, I have triplicates for each number, that's why I have X1, X1.1 and X1.2
X1 X1.1 X1.2
X1 0.000000000 NA NA
X1.1 0.013452613 0.000000000 NA
X1.2 0.008110273 0.007781853 0
X73 X73.1 X73.2
X73 0.00000000 NA NA
X73.1 0.05336268 0.00000000 NA
X73.2 0.04450677 0.05150902 0
and so on...
I applied this code (NB: 261 is the number of samples)
mat <- 1-ibsmat
mat1 <- mat[-99:-100,-99:-100]
x <- seq(1,261,3)
err.r <- rep(NA, length(x))
for (i in 1:(length(x)-1)){
k <- x[i]
k1=k+2
ibx <- mat1[k:k1,k:k1]
print(ibx)
err.r[i] <- mean(ibx[lower.tri(ibx)])
}
errorrate <- mean(na.omit(err.r))
Everything works fine until the numbers starts to overlap with others (see example below).
X91.1 X91.2 X12
X91.1 0.00000000 NA NA
X91.2 0.01587456 0.0000000 NA
X12 0.10722157 0.1139528 0
Do you have any clue?
python r windows matrix
asked Nov 21 '18 at 23:03
N MeriamN Meriam
145
add a comment |
I'm a newbie with R and I'm trying to generate this kind of sequence (see below) from a matrix and then estimate an error rate. Just to let you know, I have triplicates for each number, that's why I have X1, X1.1 and X1.2
X1 X1.1 X1.2
X1 0.000000000 NA NA
X1.1 0.013452613 0.000000000 NA
X1.2 0.008110273 0.007781853 0
X73 X73.1 X73.2
X73 0.00000000 NA NA
X73.1 0.05336268 0.00000000 NA
X73.2 0.04450677 0.05150902 0
and so on...
I applied this code (NB: 261 is the number of samples)
mat <- 1-ibsmat
mat1 <- mat[-99:-100,-99:-100]
x <- seq(1,261,3)
err.r <- rep(NA, length(x))
for (i in 1:(length(x)-1)){
k <- x[i]
k1=k+2
ibx <- mat1[k:k1,k:k1]
print(ibx)
err.r[i] <- mean(ibx[lower.tri(ibx)])
}
errorrate <- mean(na.omit(err.r))
Everything works fine until the numbers starts to overlap with others (see example below).
X91.1 X91.2 X12
X91.1 0.00000000 NA NA
X91.2 0.01587456 0.0000000 NA
X12 0.10722157 0.1139528 0
Do you have any clue?
python r windows matrix
asked Nov 21 '18 at 23:03
N MeriamN Meriam
145
I'm a newbie with R and I'm trying to generate this kind of sequence (see below) from a matrix and then estimate an error rate. Just to let you know, I have triplicates for each number, that's why I have X1, X1.1 and X1.2
X1 X1.1 X1.2
X1 0.000000000 NA NA
X1.1 0.013452613 0.000000000 NA
X1.2 0.008110273 0.007781853 0
X73 X73.1 X73.2
X73 0.00000000 NA NA
X73.1 0.05336268 0.00000000 NA
X73.2 0.04450677 0.05150902 0
and so on...
I applied this code (NB: 261 is the number of samples)
mat <- 1-ibsmat
mat1 <- mat[-99:-100,-99:-100]
x <- seq(1,261,3)
err.r <- rep(NA, length(x))
for (i in 1:(length(x)-1)){
k <- x[i]
k1=k+2
ibx <- mat1[k:k1,k:k1]
print(ibx)
err.r[i] <- mean(ibx[lower.tri(ibx)])
}
errorrate <- mean(na.omit(err.r))
Everything works fine until the numbers starts to overlap with others (see example below).
X91.1 X91.2 X12
X91.1 0.00000000 NA NA
X91.2 0.01587456 0.0000000 NA
X12 0.10722157 0.1139528 0
Do you have any clue?
python r windows matrix
python r windows matrix
asked Nov 21 '18 at 23:03
N MeriamN Meriam
145
asked Nov 21 '18 at 23:03
N MeriamN Meriam
145
edited Nov 22 '18 at 19:39
N Meriam
asked Nov 21 '18 at 23:03
N MeriamN Meriam
145
asked Nov 21 '18 at 23:03
N MeriamN Meriam
145
asked Nov 21 '18 at 23:03
N MeriamN Meriam
145
145
add a comment |
add a comment |
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