function in R to retrieve amino acid composition from a protein sequence?
I was looking for some function that given a protein, I can retrieve amino acid composition, number of stops, etc... is there a library available? or the only way to do it is manually count the appearance of each letter?
For example for GC in DNA I use this great function:
https://www.rdocumentation.org/packages/seqinr/versions/3.4-5/topics/G%2BC%20Content
Is there something similar for proteins?
r
asked Nov 20 '18 at 13:22
Chicago1988Chicago1988
86214
add a comment |
I was looking for some function that given a protein, I can retrieve amino acid composition, number of stops, etc... is there a library available? or the only way to do it is manually count the appearance of each letter?
For example for GC in DNA I use this great function:
https://www.rdocumentation.org/packages/seqinr/versions/3.4-5/topics/G%2BC%20Content
Is there something similar for proteins?
r
asked Nov 20 '18 at 13:22
Chicago1988Chicago1988
86214
2
you could post an simple example along with the desired outcome. Otherwise your question is considered to be offtopic here on this programming site.
– Andre Elrico
Nov 20 '18 at 13:25
add a comment |
I was looking for some function that given a protein, I can retrieve amino acid composition, number of stops, etc... is there a library available? or the only way to do it is manually count the appearance of each letter?
For example for GC in DNA I use this great function:
https://www.rdocumentation.org/packages/seqinr/versions/3.4-5/topics/G%2BC%20Content
Is there something similar for proteins?
r
asked Nov 20 '18 at 13:22
Chicago1988Chicago1988
86214
I was looking for some function that given a protein, I can retrieve amino acid composition, number of stops, etc... is there a library available? or the only way to do it is manually count the appearance of each letter?
For example for GC in DNA I use this great function:
https://www.rdocumentation.org/packages/seqinr/versions/3.4-5/topics/G%2BC%20Content
Is there something similar for proteins?
r
r
asked Nov 20 '18 at 13:22
Chicago1988Chicago1988
86214
asked Nov 20 '18 at 13:22
Chicago1988Chicago1988
86214
asked Nov 20 '18 at 13:22
Chicago1988Chicago1988
86214
asked Nov 20 '18 at 13:22
Chicago1988Chicago1988
86214
asked Nov 20 '18 at 13:22
Chicago1988Chicago1988
86214
86214
2
you could post an simple example along with the desired outcome. Otherwise your question is considered to be offtopic here on this programming site.
– Andre Elrico
Nov 20 '18 at 13:25
add a comment |
2
you could post an simple example along with the desired outcome. Otherwise your question is considered to be offtopic here on this programming site.
– Andre Elrico
Nov 20 '18 at 13:25
2
2
you could post an simple example along with the desired outcome. Otherwise your question is considered to be offtopic here on this programming site.
– Andre Elrico
Nov 20 '18 at 13:25
you could post an simple example along with the desired outcome. Otherwise your question is considered to be offtopic here on this programming site.
– Andre Elrico
Nov 20 '18 at 13:25
add a comment |
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you could post an simple example along with the desired outcome. Otherwise your question is considered to be offtopic here on this programming site.
– Andre Elrico
Nov 20 '18 at 13:25